New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5581109	51 (0.940)	4 (0.080)	4/248	NT	7.3%	coding (144/1458 nt)	PP_4910	hypothetical protein
	?	NC_002947	= 5581144	53 (1.030)					coding (179/1458 nt)	PP_4910	hypothetical protein

GCTCTGTGAACCGGCCCACGCCAGTCAAACCAGACAATTTCTTCCTGATGATCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5580961‑5581109 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgcTCATGCATGGCCTGCTTGAACTGCAGGCCCATCACGCAGGCGTAGATCACCAGCGCCAGCGCCACCAGGAAAATGTTGGTGCAGGCGATGCGCAGTGCCAGCGGCACACGACGTTGACTCAGGGCGCGATAGATCATCAGGAAG  <  NC_002947/5581144‑5581001                                                                                                                                                                                                                                                                                                       GCTCTGTGAACCGGCCCACGCCAGTCAAACCAGACAATTTCTTCCTGATGATCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGC                                                                                                                                                  <  1:226369/149‑1                                                              CCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCTCATGCATGGCCTGCTTGAACTGCAGGCCCATCACGCAGG                                                                                                          <  3:73237/128‑1                                                              CCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCTCATGCATGGCCTGCTTGAACTGCAGGCCCATCACGCAGG                                                                                                          >  4:73237/1‑128                                                                      AACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGC                                                                                                                                                      <  5:216163/76‑1                                                                      AACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGC                                                                                                                                                      >  6:216163/1‑76                                                                                         ACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCTCATGCATGGCCTGCTTGAACTGCAGGCCCATCACGCAGGCGTAGATCACCA                                                                                              >  3:97522/1‑113                                                                                         ACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCTCATGCATGGCCTGCTTGAACTGCAGGCCCATCACGCAGGCGTAGATCACCA                                                                                              <  4:97522/113‑1                                                                                                                                                GCCTGCTCATGCATGGCCTGCTTGAACTGCAGGCCCATCACGCAGGCGTAGATCACCAGCGCCAGCGCCACCAGGAAAATGTTGGTGCAGGCGATGCGCAGTGCCAGCGGCACACGACGTTGACTCAGGGCGCGATAGATCATCAGGAA   >  1:313327/1‑149                                                                                                                                                 CCTGCTCATGCATGGCCTGCTTGAACTGCAGGCCCATCACGCAGGCGTATATCACCAGCGCCAGCGCCACCAGGAAAATGTTGGTGCAGGCGATGCGCAGTGCCAGCGGCACACGACGTTGACTCAGGGCGCGATAGATCATCAGGAAG  <  5:196243/149‑1                                                                                                                                                                                                                                                                                                       GCTCTGTGAACCGGCCCACGCCAGTCAAACCAGACAATTTCTTCCTGATGATCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5580961‑5581109 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgcTCATGCATGGCCTGCTTGAACTGCAGGCCCATCACGCAGGCGTAGATCACCAGCGCCAGCGCCACCAGGAAAATGTTGGTGCAGGCGATGCGCAGTGCCAGCGGCACACGACGTTGACTCAGGGCGCGATAGATCATCAGGAAG  <  NC_002947/5581144‑5581001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.