New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5666565	51 (0.940)	3 (0.060)	3/248	NT	5.2%	coding (579/1236 nt)	nhaP	NhaP‑type Na+(K+)/H+ antiporter
	?	NC_002947	= 5666609	60 (1.160)					coding (623/1236 nt)	nhaP	NhaP‑type Na+(K+)/H+ antiporter

GACCCGATTGCCGTGCTTGGCGCGCTGCGTACTGCCAATGCGCCCAAACCGCTTAAAACCACCATCGTCGGCGAGTCACTGTTCAACGACGGCACGGCAGTCGTGGTATTCACCGTGTTGCTGGGCATCATCCAGCTGGGTGAAACACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5666416‑5666565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaccgCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGGCCATGCTCGGTGTTTCACCCAGCTGGATGATGCCCAGCAACACGGTGAATACCACGACTGCCGTGCCGTCGTTGAACAGTGACTCGCCGACGATGGTGGTTTTAAGCGGT  <  NC_002947/5666609‑5666463                                                                                                                                                                                                                                                                                                           GACCCGATTGCCGTGCTTGGCGCGCTGCGAAGTGCCAATGCGCCCAAACCGCTTAAAACCACCATCGTCGGCGAGTCACTGTTCAACGACGGCACGGCAGTCGTGGTATTCACCGTGTTGCTGGGCATGATCCAGCTGGTTGAAACACC                                                                                                                                                      >  3:155097/1‑149                                                  CGCTTAAAACCACCATCGTCGGCGAGTCACTGTTCAACGACGGCACGGCAGTCGTGGTATTCACCGTGTTGCTGGGCATCATCCAGCTGGGTGAAACACCGCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGG                                                                                                                >  7:56565/1‑138                                                  CGCTTAAAACCACCATCGTCGGCGAGTCACTGTTCAACGACGGCACGGCAGTCGTGGTATTCACCGTGTTGCTGGGCATCATCCAGCTGGGTGAAACACCGCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGG                                                                                                                <  8:56565/138‑1                                                    CTTAAAACCACCATCGTCGGCGAGTCACTGTTCAACGACGGCACGGCAGTCGTGGTATTCACCGTGTTGCTGGGCATCATCCAGCTGGGTGAAACACCGCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGGCCATGCTCGGTGT                                                                                                   <  8:42733/149‑1                                                                                                                                                   ACCGCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGGCCATGCTCGGTGTTTCACCCAGCTGGATGATGCCCAGCAACACGGTGAATACCACGACTGCCGTGCCGTCGTTGAACAGTGACTCGCCGACGATGGTGGTTTTAAGCG    <  3:175563/149‑1                                                                                                                                                   ACCGCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGGCCATGCTCGGTGTTTCACCCAGCTGGATGATGCCCAGCAACACGGTGAATACCACGACTGCCGTGCCGTCGTTGAACAGTGACTCGCCGACGATGGTGGTTTTAAGCG    <  5:182847/149‑1                                                                                                                                                     CGCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGGCCATGCTCGGTGTTTCACCCAGCTGGATGATGCCCAGCAACACGGTGAATACCACGACTGCCGTGCCGTCGTTGAACAGTGACTCGCCGACGATGGTGGTTTTAAGCGGT  <  1:135054/149‑1                                                                                                                                                                                                                                                                                                           GACCCGATTGCCGTGCTTGGCGCGCTGCGTACTGCCAATGCGCCCAAACCGCTTAAAACCACCATCGTCGGCGAGTCACTGTTCAACGACGGCACGGCAGTCGTGGTATTCACCGTGTTGCTGGGCATCATCCAGCTGGGTGAAACACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5666416‑5666565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaccgCCAATGGCCTCGCGGGCGAACAGGATCGCCGTGTCGGCCATGCTCGGTGTTTCACCCAGCTGGATGATGCCCAGCAACACGGTGAATACCACGACTGCCGTGCCGTCGTTGAACAGTGACTCGCCGACGATGGTGGTTTTAAGCGGT  <  NC_002947/5666609‑5666463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.