New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5685459	79 (1.460)	4 (0.080)	4/244	NT	5.3%	coding (1434/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
	?	NC_002947	= 5685481	70 (1.380)					coding (1412/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver

CGAACACCTGCTGCAGCGCTACAACCCCTTCCGGACTGAGCACGCTGCGGCCCTCGAGCACCCGGTTCAGCAGGTGCTCGGCGCCCCAGGCCAGTTCAGCCACCGCCTCGGCATGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5685308‑5685459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcgcgAGGCACTGGGTGAAGTGCGTCGCGCGCTGCATACACTCAAAGGCAGCGGCCGCATGGTCCATGCCGAGGCGGTGGCTGAACTGGCCTGGGGCGCCGAGCACCTGCTGAACCGGGTGCTCGAGGGCCGCAGCGTGCTCAGTCCGGAAGG  <  NC_002947/5685481‑5685334                                                                                                                                                                                                                                                                                                              CGAACACCTGCTGCAGCGCTACAACCCCTTCCGGACTGAGCACGCTGCGGCCCTCGAGCACCCGGTTCAGCAGGTGCTCGGCGCCCCAGGCCAGTTCAGCCACCGCCTCGGCATGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGC                                                                                                                                                         >  6:106000/1‑149   ttCACCTGCTGCAGCGCTACAACCCCTTCCGGACTGAGCACGCTGCGGCCCTCGAGCACCCGGTTCAGCAGGTGCTCGGCGCCCCAGGCCAGTTCAGCCACCGCCTCGGCATGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGC                                                                                                                                                       >  4:91117/3‑149                       AACCCCTTCCGGACTGAGCACGCTGCGGCCCTCGAGCACCCGGTTCAGCAGGTGCTCGGCGCCCCAGGCCAGTTCAGCCACCGCCTCGGCATGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCGAGGCACTGGGTGAAGTGCG                                                                                                                                   >  1:141377/1‑149                                  GACTGAGCACGCTGCGGCCCTCGAGCACCCGGTTCAGCAGGTGCTCGGCGCCCCAGGCCAGTTCAGCCACCGCCTCGGCATGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCGAGGCACTGGGTGAAGTGCGTCGCGCGCTGC                                                                                                                        <  2:141377/149‑1                                                 GGCCCTCGAGCACCCGGTTCAGCAGGTGCTCGTCGCCCCAGGCCAGTTCAGCCACCGCCTCGGCATGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCGAGGCACTGGGTGAAGTGCGTCGCGCGCTG                                                                                                                         >  1:216263/1‑133                                                 GGCCCTCGAGCACCCGGTTCAGCAGGTGCTCGGCGCCCCAGGCCAGTTCAGCCACCGCCTCGGCATGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCGAGGCACTGGGTGAAGTGCGTCGCGCGCTG                                                                                                                         <  2:216263/133‑1                                                                                                                                                  CAGCGCGAGGCACTGGGTGAAGTGCGTCGCGCGCTGCATACACTCAAAGGCAGCGGCCGCATGGTCCATGCCGAGGCGGTGGCTGAACTGGCCTGGGGCGCCGAGCACCTGCTGAACCGGGTGCTCGAGGGCCGCAGCGTGCTCAGTCC        <  4:275073/149‑1                                                                                                                                                        GAGGCACTGGGTGAAGTGCGTCGCGCGCTGCATACACTCAAAGGCAGCGGCCGCATGGTCCATGCCGAGGCGGTGGCTGAACTGGCCTGGGGCGCCGAGCACCTGCTGAACCGGGTGCTCGAGGGCCGCAGCGTGCTCAGTCCGGAAGG  <  2:132912/149‑1                                                                                                                                                        GAGGCACTGGGTGAAGTGCGTCGCGCGCTGCATACACTCAAAGGCAGCGGCCGCATGGTCCATGCCGAGGCGGTGGCTGAACTGGCCTGGGGCGCCGAGCACCTGCTGAACCGGGTGCTCGAGGGCCGCAGCGTGCTCAGTCCGGAAGG  <  3:211056/149‑1                                                                                                                                                                                                                                                                                                              CGAACACCTGCTGCAGCGCTACAACCCCTTCCGGACTGAGCACGCTGCGGCCCTCGAGCACCCGGTTCAGCAGGTGCTCGGCGCCCCAGGCCAGTTCAGCCACCGCCTCGGCATGGACCATGCGGCCGCTGCCTTTGAGTGTATGCAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5685308‑5685459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcgcgAGGCACTGGGTGAAGTGCGTCGCGCGCTGCATACACTCAAAGGCAGCGGCCGCATGGTCCATGCCGAGGCGGTGGCTGAACTGGCCTGGGGCGCCGAGCACCTGCTGAACCGGGTGCTCGAGGGCCGCAGCGTGCTCAGTCCGGAAGG  <  NC_002947/5685481‑5685334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.