New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5759435	29 (0.540)	5 (0.120)	5/196	NT	13.4%	intergenic (+44/+112)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5759463	43 (1.060)					intergenic (+72/+84)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB

GGTGCTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5759256‑5759435 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcctcttcgcgggtaaacccgctcctacAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACAGGCAACACATCAGCTCCCGGCAAACCCGTTCTGCCGCCACGCCTCATACACCGTCACCGCCACCGTATTGGACAGGTTCAGGC  <  NC_002947/5759463‑5759318                                                                                                                                                                                                                                                                                                                                         GGTGCTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTG                                                                                                                                                                                   <  1:91114/149‑1     CTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGG                                                                                                                                                                                <  4:150294/148‑1             CCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCG                                                                                                                                                                       >  1:336411/1‑149              CTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTAGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCGGCGCGGGCCTCTTCGC                                                                                                                                                                      >  5:123561/1‑149                 CCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCT‑GTCCAATACGGTGGCGGTTACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGG                                                                                                                                                                    <  4:203653/148‑1                      CGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAAC                                                                                                                                                              <  2:270097/149‑1                       GAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAAC                                                                                                                                                              >  1:85830/1‑149                          CATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                          <  2:109865/149‑1                          CATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                          <  6:327346/149‑1                                  GCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCT                                                                                                                                                         <  1:336535/142‑1                                  GCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCT                                                                                                                                                         >  2:336535/1‑142                                    GCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT                                                                                                                                                      >  4:266/1‑143                                    GCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCT                                                                                                                                                      <  3:266/143‑1                                                            GTAGCCTGAACCT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGAAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGC                                                                                                                        >  4:263629/1‑149                                                                       CT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTAGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCGGCGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGG                                                                                                             <  6:123561/149‑1                                                                                    GTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGAAGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAA                                                                                                 <  3:263629/149‑1                                                                                                         GCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGG                                                                                                              >  2:19298/1‑115                                                                                                         GCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGG                                                                                                              <  1:19298/115‑1                                                                                                                                                    gcggGGGCCTCTTCCCGGTTAAACCCGCTCCTACCGGGCATTGCGCCGTCCCCTCGCCCTGCGACGCAGCGGGTTTACCCGCGAAGAGGCCCGCACAGGCAACACATCAGCTCCCGGCAAACCCGTTCTGCCGCCACGCCTCATACACC                                 <  8:161227/145‑1                                                                                                                                                                         ccCCCGCGACTCCAGGGGATTGCGGCGTTCCCTGGGCGTGCTATGGAGCGTGTTTACCCGCGAAGAGGCCCGCACAGGCAACACATCAGCTCCCGGCAAACCCGTTCTGCCGCCACGCCTCATACACCGTCACCGCCACCGTATTGGA             <  3:194010/146‑1                                                                                                                                                                             CGCGCCTCCCGGGGATGGCCCCGTTCCGGCGCCCGGCGTCGCCGGGGGTTTCCCCGCGAAGAGGCCCGCACAGGCAACACATCAGCTCCCGGCAAACCCGTTCTGCCGCCACGCCTCATACACCGTCACCGCCACCGTATTGGACAGGT        <  8:160594/149‑1                                                                                                                                                                                   TACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACAGGCAACACATCAGCTCCCGGCAAACCCGTTCTGCCGCCACGCCTCATACACCGTCACCGCCACCGTATTGGACAGGTTCAGGC  >  4:194153/1‑149                                                                                                                                                                                    ACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACAGGCAACACATCAGCTCCCGGCAAACCCGTTCTGCCGCCACGCCTCATACACCG                                <  2:261151/118‑1                                                                                                                                                                                    ACAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACAGGCAACACATCAGCTCCCGGCAAACCCGTTCTGCCGCCACGCCTCATACACCG                                >  1:261151/1‑118                                                                                                                                                                                                                                                                                                                                         GGTGCTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCT‑GTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5759256‑5759435 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcctcttcgcgggtaaacccgctcctacAGGGGATTGCGCCGTTCCCTCGGCCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACAGGCAACACATCAGCTCCCGGCAAACCCGTTCTGCCGCCACGCCTCATACACCGTCACCGCCACCGTATTGGACAGGTTCAGGC  <  NC_002947/5759463‑5759318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.