| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5759435 | 29 (0.540) | 5 (0.120) | 5/196 | NT | 13.4% | intergenic (+44/+112) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB |
| ? | NC_002947 | = 5759463 | 43 (1.060) | intergenic (+72/+84) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB | |||||
GCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGT > NC_002947/5759318‑5759611 | gCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTgta > 4:194153‑M2/1‑146 (MQ=255) ccTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCCCTCCGAAGCAGGCCG‑AGGGAAAGGCGCCATCCCCAGttt > 3:141202/1‑147 (MQ=39) gAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCACTTCGCGGGT‑AAA‑AACCCGCAAACCCACGCCG‑AGCGGACGGCGCCATCCCACGTTGGAg > 8:29975/1‑149 (MQ=255) aCCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGG‑AAA‑CCCCCGGCGACGCCGGGCG‑CCGGAACGGGGCCATCCCCGggaggcgcg < 8:160594‑M2/149‑10 (MQ=255) tCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CACGCTCCATAGCACGCCC‑AGGGAACGCCGCAATCCCCTggagtcgcggggg < 3:194010‑M2/148‑14 (MQ=255) cGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTgt > 1:261151‑M2/1‑116 (MQ=255) cGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTgt < 2:261151‑M2/118‑3 (MQ=255) ggTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTGCGTCGCAGGGCG‑AGGGGACGGCGCAATGCCCGgtaggagcgggtttaaccgggaagaggcccccgc < 8:161227‑M2/149‑35 (MQ=255) aGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGGTTACCCGCGCAGCGGCCCGCGCCGGcaac > 7:318874/1‑148 (MQ=255) gCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑TAA‑ACCGCGGCGACGCAGGGCG‑GGGGGACCGGGGAATCCCCGGGAGGTGCGGGGTTTCCCGCGAAGAGGGCCGCGCCGGcaacaa > 5:16689/1‑148 (MQ=255) gCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑GGGGCACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGcaacaa > 7:307011/1‑148 (MQ=255) ggcAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCGGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAgcgc > 1:26630/1‑149 (MQ=255) aGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTGCTACGCCGGCCG‑AGGGAACCGCGCAATCCCCTGTACGAGCCGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACaaaaaa > 1:221232/1‑142 (MQ=38) aaCGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGcccc > 1:258975/1‑148 (MQ=255) gTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCCCTCCAACGCAGGCCG‑AGGGAACGGCGCAAACCCCGGTAGGAGCGGGGTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGgc > 6:136101/1‑149 (MQ=39) gctcttgtgtgGCGTGGGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTCCCCCGGCCG‑TGGTACCGGCGCAACCCCCTGTTGGAGCGGTTTTACCCGCTAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTCGaa < 2:85830/144‑1 (MQ=255) gATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCCGGCCGACGCAGGGCG‑AGGGAACCGCGCAAACCCCGGTAGGGGCGGGTTTACCCGCGAAGCGGCCCGCCCCGGCAACAAAAAAGCGCCCCGAGAGGCGGGTTCGTGAAAcc > 6:103130/1‑149 (MQ=255) aTGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTGCTACGCAGGCCGAAGGGAACGGGGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGGGGGGCGCGTTCTTGGAAcc > 1:89960/1‑149 (MQ=38) tgtccccTGGGCGGCCCGCTGCGCGGGA‑AAC‑CCCGCCCCACCCCCGCCCG‑CGGCACCGCCCCACCCCCCTGCCGCCGCGGGTTACCCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCa < 2:89960/144‑1 (MQ=255) cgggggCGGGCCTCTCCGGGGGA‑AAC‑CCCCCTCCTCCGCAGCCCT‑CGGCACCGGCGAAACCCCCTGACGCCGCGGGTTTACCCGCTAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAAt < 7:161227/144‑1 (MQ=255) tgCGGGCCTCTTCGCGGGT‑AAA‑CCCCCGCCGACCCAGGCCG‑AGGGAACGGCGCAATCCCCGGTAGGCGCGGGTTTAACCCCGAAGAGGCCCGCCCCGGCAACAAAAAAGCGCCCCCAGAGGCGCTTTGTTGAAACCGGCAGTAATTTCt > 6:177370/1‑149 (MQ=255) ggCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGCACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGGGCTTTCTTGAAACCGGCAGTGATTACTGca > 7:225677/1‑148 (MQ=255) ctctTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGCGAGGCGCTTTCTTGGAACCGGCCGTAATTACTGCACAGt > 7:227076/1‑149 (MQ=255) ttCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTgtaggagcgggtttacccgcgaagaggcccgcacaggcaacacttcagctcccggcaaacccgttctgccgccacgcctcatacaccgtcaccgccac < 3:263629‑M2/149‑99 (MQ=255) ttCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCa > 3:74870/1‑130 (MQ=255) cgcgGGT‑AAA‑CCCCCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGgcg > 6:197720/1‑149 (MQ=255) gT‑AAACCCCGCTCCTACTCTGGCGT‑TGGCAAGGGCGAAACCCCTTGTCGTCGGGGTTTAACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTc < 2:26630/149‑1 (MQ=255) gT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCa > 4:188551/1‑149 (MQ=255) a‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCg > 6:258192/1‑149 (MQ=255) cccGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTgtaggagcgggtttacccgcgaagaggcccgcgccggcaacacatcagctcccggcaaacccgttctgccgctacgcctcatacaccgtcaccgccaccgtattggacag < 6:123561‑M2/149‑111 (MQ=255) cccGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGc > 4:207674/1‑149 (MQ=255) ccGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTgtaggagcgggtttacccgcgaagaggcccgcacaggcaacacatcagctcccggcaaacccgttctgccgccacgc < 1:19298‑M2/115‑78 (MQ=255) ccGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTgtaggagcgggtttacccgcgaagaggcccgcacaggcaacacatcagctcccggcaaacccgttctgccgccacgc > 2:19298‑M2/1‑38 (MQ=255) ccGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCt > 2:300972/1‑149 (MQ=255) ccGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCt > 1:142253/1‑149 (MQ=255) cGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCtt > 3:46060/1‑149 (MQ=255) cTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTg > 1:319376/1‑148 (MQ=255) cTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTg > 7:152769/1‑148 (MQ=255) gCAGGCCG‑AGGGAACGGCGCAATCCCCTgtaggagcgggtttacccgcgaagaggcccgcacaggcaacacttcagctcccggcaaacccgttctgccgccacgcctcatacaccgtcaccgccaccgtattggacaggttcaggctac > 4:263629‑M2/1‑28 (MQ=255) gCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATAc > 3:270015/1‑149 (MQ=255) gCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCtt < 7:77046/93‑1 (MQ=255) gCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCtt > 8:77046/1‑93 (MQ=255) cG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCa < 5:258192/149‑1 (MQ=255) cgcgggACCGGCGCAATCCCCTGTCGGCGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCa < 8:225677/146‑1 (MQ=255) gAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCt > 7:321667/1‑149 (MQ=255) aaCGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCtt < 8:152769/149‑1 (MQ=255) aaCGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCtt < 2:142253/149‑1 (MQ=255) cGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTgc < 4:46060/149‑1 (MQ=255) ggCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCACCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTgcg > 2:82802/1‑149 (MQ=255) gcgcAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGc > 7:271276/1‑122 (MQ=255) gcgcAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGc < 8:271276/122‑1 (MQ=255) gcgcAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTgcgc < 4:270015/149‑1 (MQ=255) gcAATCCACTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGAGCCCCGAGATGCGCTTTCTTGAAACCGGCAGAAATTACTGCACAGTAGGCGATTCACCCGCTTCCTGCATACGATACATTACTTGctcg > 2:307198/1‑148 (MQ=38) aTCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTa > 5:234885/1‑147 (MQ=255) tCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAg > 6:342964/1‑149 (MQ=255) tCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAg < 5:197720/149‑1 (MQ=255) tGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGt > 7:259988/1‑149 (MQ=255) | GCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGCATACGCTGCATTTCTTGCGCGTACAGGGCGT > NC_002947/5759318‑5759611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |