| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5759435 | 29 (0.540) | 5 (0.120) | 5/196 | NT | 13.4% | intergenic (+44/+112) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB |
| ? | NC_002947 | = 5759463 | 43 (1.060) | intergenic (+72/+84) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB | |||||
CGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGC > NC_002947/5759290‑5759580 | cgcctgcCGATGCGGCCTGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACg < 2:336411/147‑1 (MQ=255) gATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑Agg < 6:308873/149‑1 (MQ=255) gTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGAAGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACaggggattgcgccgttccctcggcctgc > 4:263629‑M1/1‑121 (MQ=255) gCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTgta > 4:194153‑M2/1‑146 (MQ=255) ccTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCCCTCCGAAGCAGGCCG‑AGGGAAAGGCGCCATCCCCAGttt > 3:141202/1‑147 (MQ=39) tGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑Ag > 1:341065/1‑125 (MQ=255) tGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑Ag < 2:341065/125‑1 (MQ=255) gAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCACTTCGCGGGT‑AAA‑AACCCGCAAACCCACGCCG‑AGCGGACGGCGCCATCCCACGTTGGAg > 8:29975/1‑149 (MQ=255) aCCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGG‑AAA‑CCCCCGGCGACGCCGGGCG‑CCGGAACGGGGCCATCCCCGggaggcgcg < 8:160594‑M2/149‑10 (MQ=255) cTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTAGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCGGCGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACaggggattgcgccgttccctcggcctgcgtaggagcggg < 6:123561‑M1/149‑40 (MQ=255) tCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CACGCTCCATAGCACGCCC‑AGGGAACGCCGCAATCCCCTggagtcgcggggg < 3:194010‑M2/148‑14 (MQ=255) gTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGAAGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaa < 3:263629‑M1/149‑52 (MQ=255) cGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTgt > 1:261151‑M2/1‑116 (MQ=255) cGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTgt < 2:261151‑M2/118‑3 (MQ=255) ggTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTGCGTCGCAGGGCG‑AGGGGACGGCGCAATGCCCGgtaggagcgggtttaaccgggaagaggcccccgc < 8:161227‑M2/149‑35 (MQ=255) aGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGGTTACCCGCGCAGCGGCCCGCGCCGGcaac > 7:318874/1‑148 (MQ=255) gCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑TAA‑ACCGCGGCGACGCAGGGCG‑GGGGGACCGGGGAATCCCCGGGAGGTGCGGGGTTTCCCGCGAAGAGGGCCGCGCCGGcaacaa > 5:16689/1‑148 (MQ=255) gCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACaggggattgcgccgttccctcggcctgcgtaggagcgg < 1:19298‑M1/115‑39 (MQ=255) gCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACaggggattgcgccgttccctcggcctgcgtaggagcgg > 2:19298‑M1/1‑77 (MQ=255) gCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑GGGGCACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGcaacaa > 7:307011/1‑148 (MQ=255) ggcAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCGGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAgcgc > 1:26630/1‑149 (MQ=255) aGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTGCTACGCCGGCCG‑AGGGAACCGCGCAATCCCCTGTACGAGCCGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACaaaaaa > 1:221232/1‑142 (MQ=38) aaCGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTGAAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGcccc > 1:258975/1‑148 (MQ=255) gTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCCCTCCAACGCAGGCCG‑AGGGAACGGCGCAAACCCCGGTAGGAGCGGGGTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGgc > 6:136101/1‑149 (MQ=39) gctcttgtgtgGCGTGGGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTCCCCCGGCCG‑TGGTACCGGCGCAACCCCCTGTTGGAGCGGTTTTACCCGCTAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTCGaa < 2:85830/144‑1 (MQ=255) gATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCCGGCCGACGCAGGGCG‑AGGGAACCGCGCAAACCCCGGTAGGGGCGGGTTTACCCGCGAAGCGGCCCGCCCCGGCAACAAAAAAGCGCCCCGAGAGGCGGGTTCGTGAAAcc > 6:103130/1‑149 (MQ=255) aTGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTGCTACGCAGGCCGAAGGGAACGGGGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGGGGGGCGCGTTCTTGGAAcc > 1:89960/1‑149 (MQ=38) tgtccccTGGGCGGCCCGCTGCGCGGGA‑AAC‑CCCGCCCCACCCCCGCCCG‑CGGCACCGCCCCACCCCCCTGCCGCCGCGGGTTACCCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCa < 2:89960/144‑1 (MQ=255) cgggggCGGGCCTCTCCGGGGGA‑AAC‑CCCCCTCCTCCGCAGCCCT‑CGGCACCGGCGAAACCCCCTGACGCCGCGGGTTTACCCGCTAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAAt < 7:161227/144‑1 (MQ=255) gcgggggcctcTTCCCGGTT‑AAA‑CCCGCTCCTACcgggcattgcgccgtcccctcgccctgcgacgcagcgggtttacccgcgaagaggcccgcacaggcaacacatcagctcccggcaaacccgttctgccgccacgcctcatacacc < 8:161227‑M1/145‑116 (MQ=255) tgCGGGCCTCTTCGCGGGT‑AAA‑CCCCCGCCGACCCAGGCCG‑AGGGAACGGCGCAATCCCCGGTAGGCGCGGGTTTAACCCCGAAGAGGCCCGCCCCGGCAACAAAAAAGCGCCCCCAGAGGCGCTTTGTTGAAACCGGCAGTAATTTCt > 6:177370/1‑149 (MQ=255) ggCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGCACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGGGCTTTCTTGAAACCGGCAGTGATTACTGca > 7:225677/1‑148 (MQ=255) ctctTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGCGAGGCGCTTTCTTGGAACCGGCCGTAATTACTGCACAGt > 7:227076/1‑149 (MQ=255) ttCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTgtaggagcgggtttacccgcgaagaggcccgcacaggcaacacttcagctcccggcaaacccgttctgccgccacgcctcatacaccgtcaccgccac < 3:263629‑M2/149‑99 (MQ=255) ttCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCa > 3:74870/1‑130 (MQ=255) cgcgGGT‑AAA‑CCCCCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGgcg > 6:197720/1‑149 (MQ=255) gT‑AAACCCCGCTCCTACTCTGGCGT‑TGGCAAGGGCGAAACCCCTTGTCGTCGGGGTTTAACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTc < 2:26630/149‑1 (MQ=255) gT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCa > 4:188551/1‑149 (MQ=255) cccccgcGACTCCaggggattgcggcgttccctgggcgtgctatggagcgtgtttacccgcgaagaggcccgcacaggcaacacatcagctcccggcaaacccgttctgccgccacgcctcatacaccgtcaccgccaccgtattgga < 3:194010‑M1/146‑136 (MQ=255) a‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCg > 6:258192/1‑149 (MQ=255) cccGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTgtaggagcgggtttacccgcgaagaggcccgcgccggcaacacatcagctcccggcaaacccgttctgccgctacgcctcatacaccgtcaccgccaccgtattggacag < 6:123561‑M2/149‑111 (MQ=255) cccGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGc > 4:207674/1‑149 (MQ=255) ccGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTgtaggagcgggtttacccgcgaagaggcccgcacaggcaacacatcagctcccggcaaacccgttctgccgccacgc > 2:19298‑M2/1‑38 (MQ=255) ccGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTgtaggagcgggtttacccgcgaagaggcccgcacaggcaacacatcagctcccggcaaacccgttctgccgccacgc < 1:19298‑M2/115‑78 (MQ=255) ccGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCt > 2:300972/1‑149 (MQ=255) ccGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCt > 1:142253/1‑149 (MQ=255) cgcgCCTCCcggggatggccccgttccggcgcccggcgtcgccgggggtttccccgcgaagaggcccgcacaggcaacacatcagctcccggcaaacccgttctgccgccacgcctcatacaccgtcaccgccaccgtattggacaggt < 8:160594‑M1/149‑141 (MQ=255) cGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCtt > 3:46060/1‑149 (MQ=255) cTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTg > 7:152769/1‑148 (MQ=255) cTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTg > 1:319376/1‑148 (MQ=255) tACaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcacaggcaacacatcagctcccggcaaacccgttctgccgccacgcctcatacaccgtcaccgccaccgtattggacaggttcaggc > 4:194153‑M1/1‑3 (MQ=255) aCaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcacaggcaacacatcagctcccggcaaacccgttctgccgccacgcctcatacaccg > 1:261151‑M1/1‑2 (MQ=255) aCaggggattgcgccgttccctcggcctgcgtaggagcgggtttacccgcgaagaggcccgcacaggcaacacatcagctcccggcaaacccgttctgccgccacgcctcatacaccg < 2:261151‑M1/118‑117 (MQ=255) | CGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGT‑AAA‑CCCGCTCCTACGCAGGCCG‑AGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGCGCCGGCAACAAAAAAGCGCCCCGAGAGGCGCTTTCTTGAAACCGGCAGTAATTACTGCACAGTAGGCGCTTCACCCGCTTCCTGC > NC_002947/5759290‑5759580 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |