New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5799887 =	76 (1.410)	6 (0.120)	5/246	NT	8.2%	coding (1089/1098 nt)	aroB	3‑dehydroquinate synthase
	?	NC_002947	5799924 =	63 (1.230)					coding (1052/1098 nt)	aroB	3‑dehydroquinate synthase

TTTCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5800040‑5799887 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggccTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGC  >  NC_002947/5799924‑5800067                                                                                                                                                                                                                                                                                                            TTTCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCG                                                                                                                                                       >  5:286023/1‑149    CATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTG                                                                                                                                                     <  1:7544/148‑1     ATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGG                                                                                                                                                    <  2:151359/148‑1     ATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGG                                                                                                                                                    <  4:230634/148‑1                         CAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGG                                                                                                                                                    <  1:333496/128‑1                                             GTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTG                                                                                                                                                     <  1:50066/107‑1                                             GTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTG                                                                                                                                                     >  2:50066/1‑107                                                   GTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTG                                                                                                                                                     <  6:116473/101‑1                                                   GTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTG                                                                                                                                                     >  5:116473/1‑101                                                                                                                 CTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTG                                       >  3:290343/1‑149                                                                                                                  TCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGC                                      >  6:95673/1‑149                                                                                                                  TCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGAC                                                                               <  4:80289/108‑1                                                                                                                  TCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGAC                                                                               >  3:80289/1‑108                                                                                                                       GCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCC                                   <  5:233967/147‑1                                                                                                                       GCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCC                                   >  6:233967/1‑147                                                                                                                                                     GTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGG   <  5:95673/149‑1                                                                                                                                                     GTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGG   <  8:111039/149‑1                                                                                                                                                     GTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCGTGTCGACAGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTGCTGTGGTGG   >  6:279430/1‑149                                                                                                                                                      TGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGC  <  3:15515/149‑1                                                                                                                                                                                                                                                                                                            TTTCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5800040‑5799887 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggccTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGC  >  NC_002947/5799924‑5800067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.