New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5799887 =76 (1.410)6 (0.120) 5/246 NT 8.2% coding (1089/1098 nt) aroB 3‑dehydroquinate synthase
?NC_002947 5799924 = 63 (1.230)coding (1052/1098 nt) aroB 3‑dehydroquinate synthase

TTGAAGCCAGGTACGCGGGGCGCGAACGGATCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGC  >  NC_002947/5799777‑5800067
                                                                                                                                                   |                                                                                                                                               
ttGAAGCCAGGTACGCGGGGCGCGAACGGATCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTg                                                                                                                                                >  2:178496/1‑149 (MQ=255)
  gcacatggcggtcgacaagaaggtgctcgacggtcgtttgcgtctggtgctgctgcgccagatgggcgaggccgtggtgaccgacgactattcgaaagagattctccaGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGga                                                                                                                                              >  6:95673‑M1/109‑149 (MQ=255)
   cacatggcggtcgacaagaaggtgctcgacggtcgtttgcgtctggtgctgctgcgccagatgggcgaggccgtggtgaccgacgactattcgaaagagattctccaGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGgag                                                                                                                                             >  3:290343‑M1/108‑149 (MQ=255)
   aaGCCAGGTACGCGGGGCGCGAACGGATCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGga                                                                                                                                              <  8:153965/148‑1 (MQ=255)
    aGCCAGGTACGCGGGGCGCGAACGGATCACGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGgaga                                                                                                                                            <  6:172781/149‑1 (MQ=255)
     gCCAGGTACGCGGGGCGCGAACGGATCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGgaga                                                                                                                                            >  8:130194/1‑148 (MQ=255)
      ccAGGTACGCGGGGCGCGAACGGATCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAAt                                                                                                                                          >  6:13009/1‑149 (MQ=255)
             cgcgGGGCGCGAACGGATCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCttt                                                                                                                                    <  2:292333/148‑1 (MQ=255)
                ggggCGCGAACGGATCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGaa                                                                                                                                <  1:318313/149‑1 (MQ=255)
                ggggCGCGAACGGATCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCAGGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGaa                                                                                                                                >  6:286023/1‑149 (MQ=255)
                 gggCGCGAACTGATCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTTTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAAt                                                                                                                               <  7:300468/149‑1 (MQ=255)
                  ggCGCGAACGGATCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATa                                                                                                                              <  5:61114/149‑1 (MQ=255)
                         aCGGATCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGtcgtcg                                                                                                                       >  7:111039/1‑149 (MQ=255)
                         aCGGATCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGCAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGtcgtcg                                                                                                                       <  1:77058/149‑1 (MQ=255)
                           ggATCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGt                                                                                                                     <  3:141663/149‑1 (MQ=255)
                             aTCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTca                                                                                                                   >  4:271680/1‑149 (MQ=255)
                              tCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTcac                                                                                                                  >  6:191335/1‑149 (MQ=255)
                                  ggCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACg                                                                                                              >  1:217963/1‑149 (MQ=255)
                                   gCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACgg                                                                                                             <  1:178496/149‑1 (MQ=255)
                                       accgggTAATGGTCGAGAACGGCCGCATCGGCATGCAAACTTGTCATTGCGCTGGCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTc                                                                                                         <  8:170631/145‑1 (MQ=255)
                                       aaCTGGCAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGAGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTc                                                                                                         <  6:16555/149‑1 (MQ=255)
                                           gtctggtgctgctgcgccagatgggcgaggccgtggtgaccgacgactattcgaaagagattctccaGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGga                                                                                                                                              <  4:80289‑M1/41‑1 (MQ=255)
                                           gtctggtgctgctgcgccagatgggcgaggccgtggtgaccgacgactattcgaaagagattctccaGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGga                                                                                                                                              >  3:80289‑M1/68‑108 (MQ=255)
                                            gTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGccc                                                                                                     <  5:13009/148‑1 (MQ=255)
                                            gTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCa                                                                                                    >  4:15515/1‑149 (MQ=255)
                                             tAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTc                                                                                                                    <  1:208377/132‑1 (MQ=255)
                                             tAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTc                                                                                                                    >  2:208377/1‑132 (MQ=255)
                                              aaTGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAAtctc                                                                                                                                       >  2:342182/1‑112 (MQ=255)
                                              aaTGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAAtctc                                                                                                                                       <  1:342182/112‑1 (MQ=255)
                                               aTGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATc                                                                                                  <  1:335331/148‑1 (MQ=255)
                                                 ggTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTgg                                                                                               >  3:139496/1‑149 (MQ=255)
                                                    cGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTc                                                                                                         <  7:60760/136‑1 (MQ=255)
                                                    cGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTc                                                                                                         >  8:60760/1‑136 (MQ=255)
                                                          aGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCACGCCCATCTGGCgcagcag                                                                                       >  4:66236/1‑148 (MQ=255)
                                                             ccTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCgcagc                                                                                         <  6:31183/143‑1 (MQ=255)
                                                             ccTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTATCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCgcagc                                                                                         >  5:31183/1‑143 (MQ=255)
                                                              cTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCgcagcagca                                                                                     <  7:74325/146‑1 (MQ=255)
                                                              cTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCgcagcagca                                                                                     >  8:74325/1‑146 (MQ=255)
                                                               tCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAAtctc                                                                                                                                       <  2:264191/95‑1 (MQ=255)
                                                               tCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAAtctc                                                                                                                                       >  1:264191/1‑95 (MQ=255)
                                                               tCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCAc                                                                                    >  5:15988/1‑146 (MQ=255)
                                                                 aTCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTgg                                                                                               <  7:285651/133‑1 (MQ=255)
                                                                 aTCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTgg                                                                                               >  8:285651/1‑133 (MQ=255)
                                                                 aTCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGAc                                                                               >  5:28688/1‑149 (MQ=255)
                                                                        tGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAAt                                                                                                                                          <  4:15793/83‑1 (MQ=255)
                                                                        tGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAAt                                                                                                                                          >  3:15793/1‑83 (MQ=255)
                                                                        tGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAAc                                                                         >  6:63003/1‑148 (MQ=255)
                                                                           aaaCTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGAcc                                                                     >  1:43654/1‑149 (MQ=255)
                                                                             aCTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCAc                                                                                    >  6:26628/1‑132 (MQ=255)
                                                                             aCTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCAc                                                                                    <  5:26628/132‑1 (MQ=255)
                                                                              cTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCgcagca                                                                                        <  6:271373/127‑1 (MQ=255)
                                                                              cTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCgcagca                                                                                        >  5:271373/1‑127 (MQ=255)
                                                                              cTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTc                                                                  <  6:15988/149‑1 (MQ=255)
                                                                                 gTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCg                                                                 <  2:217963/147‑1 (MQ=255)
                                                                                 gTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGa                                                                <  3:271680/148‑1 (MQ=255)
                                                                                    aTTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCAc                                                            >  2:300805/1‑149 (MQ=255)
                                                                                     ttGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCAcc                                                           >  4:120004/1‑149 (MQ=255)
                                                                                        cgcTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACcttc                                                        <  7:130194/149‑1 (MQ=255)
                                                                                                   ccTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGc                                             >  2:326562/1‑149 (MQ=255)
                                                                                                   ccTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGAAAGCGTGGCCTGGAGAATCTCTTTCGAAAAGTCGTCGGTCACCACGGACTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGc                                             >  7:79447/1‑149 (MQ=255)
                                                                                                       aaaGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCAt                                          <  1:326562/148‑1 (MQ=255)
                                                                                                         ctccaggccacgctgtcggcggattaccgcgcgatcgtggccTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCAtgtg                                       >  3:290343‑M2/43‑149 (MQ=255)
                                                                                                          tccaggccacgctgtcggcggattaccgcgcgatcgtggccTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGAc                                                                               <  4:80289‑M2/67‑1 (MQ=255)
                                                                                                          tccaggccacgctgtcggcggattaccgcgcgatcgtggccTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGAc                                                                               >  3:80289‑M2/42‑108 (MQ=255)
                                                                                                          tccaggccacgctgtcggcggattaccgcgcgatcgtggccTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGc                                      >  6:95673‑M2/42‑149 (MQ=255)
                                                                                                            tGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTc                                    >  4:265056/1‑149 (MQ=255)
                                                                                                             gggCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTc                                    >  4:308770/1‑148 (MQ=255)
                                                                                                               gccacgctgtcggcggattaccgcgcgatcgtggccTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTcc                                   <  5:233967‑M2/111‑1 (MQ=255)
                                                                                                               gccacgctgtcggcggattaccgcgcgatcgtggccTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTcc                                   >  6:233967‑M2/37‑147 (MQ=255)
                                                                                                                CCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTg                                                     <  1:333496‑M1/128‑1 (MQ=255)
                                                                                                                CCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCAt                                 <  2:151359‑M1/148‑1 (MQ=255)
                                                                                                                CCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCAt                                 <  4:230634‑M1/148‑1 (MQ=255)
                                                                                                                 CACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGAc                                                                               <  6:116473‑M1/101‑1 (MQ=255)
                                                                                                                 CACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGAc                                                                               >  5:116473‑M1/1‑101 (MQ=255)
                                                                                                                 CACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAAc                                                                         <  1:50066‑M1/107‑1 (MQ=255)
                                                                                                                 CACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAAc                                                                         >  2:50066‑M1/1‑107 (MQ=255)
                                                                                                                 CACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATg                                <  1:7544‑M1/148‑1 (MQ=255)
                                                                                                                   CGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGaaa                             >  5:286023‑M1/1‑149 (MQ=255)
                                                                                                                           cgGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCgg                     <  3:120004/149‑1 (MQ=255)
                                                                                                                            ggTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCggg                    <  3:265056/149‑1 (MQ=255)
                                                                                                                            ggTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCggg                    <  3:230634/149‑1 (MQ=255)
                                                                                                                              tAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGt                  <  2:7544/149‑1 (MQ=255)
                                                                                                                               attcggccgACAGCGTGGCCTGGAGTATCTCTTTCGAATTGTCGTCGGTGAGGACGGCCTCGCCCATCTGGCGCAGCAGCACGTGACGCTAACGACCGTTGAGCACGTTCTTGTCGACCGCCATGTGCTCCATTAAATTCGCCGGGGt                  <  8:79447/143‑1 (MQ=255)
                                                                                                                                    gccgACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTc            <  1:151359/149‑1 (MQ=255)
                                                                                                                                       gACTGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCtg         <  6:28688/149‑1 (MQ=255)
                                                                                                                                        aCAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCtgt        <  5:63003/149‑1 (MQ=255)
                                                                                                                                         cAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCtgtg       <  5:191335/149‑1 (MQ=255)
                                                                                                                                             gtggccTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGtggtgg   <  8:111039‑M2/143‑1 (MQ=255)
                                                                                                                                             gtggccTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGtggtgg   <  5:95673‑M2/143‑1 (MQ=255)
                                                                                                                                             gtggccTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCGTGTCGACAGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTGCTGtggtgg   >  6:279430‑M2/7‑149 (MQ=255)
                                                                                                                                              tggccTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGc  <  3:15515‑M2/144‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                               
TTGAAGCCAGGTACGCGGGGCGCGAACGGATCATGGCTCAACTGGTAATGGTCGAGAAAGGCCTCATCGGCATGCAAACTTGTCATTGCGCTGTCACAACCTCAAAGCTGGGCCACGATCGCGCGGTAATCCGCCGACAGCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGC  >  NC_002947/5799777‑5800067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.