New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 22212	45 (0.830)	4 (0.080)	4/248	NT	8.1%	coding (42/360 nt)	PP_0017	transcriptional regulator
	?	NC_002947	= 22227	48 (0.930)					coding (57/360 nt)	PP_0017	transcriptional regulator

GCTCAGCCTCGTGATTGCCGATTCAGGCATGTGGGATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGCGGT  >  NC_002947/22070‑22358                                                                                                                                               |                                                                                                                                                    gCTCAGCCTCGTGATTGCCGATTCAGGCATGTGGGATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGcc                                                                                                                                               <  8:218256/149‑1 (MQ=255)   tCAGCCTCGTGATTGCCGATTCAGGCATGTGGGATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCAGCCTGCTCGAACAACAGCTCGCAGccc                                                                                                                                              >  6:291324/1‑148 (MQ=255)             gATTGCCGATTCAGGCATGTGGGATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGgag                                                                                                                                  <  5:132668‑M2/149‑4 (MQ=255)                   cGATTCAGGCATGTGGGATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCcgccagttgggctgcgagctgttg                                                                                                                             <  3:212630‑M1/149‑25 (MQ=255)                      ttCAGGCATGTGGGATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAgcg                                                                                                                         <  3:239658/149‑1 (MQ=255)                                tgGGATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAAt                                                                                                                <  6:191633/148‑1 (MQ=255)                                  ggATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGAc                                                                                                             >  6:217540/1‑149 (MQ=255)                                    aTCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGActc                                                                                                           >  6:39275/1‑149 (MQ=255)                                       aaGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTg                                                                                                         <  6:132668/148‑1 (MQ=255)                                        aGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGcc                                                                                                       >  4:13979/1‑149 (MQ=255)                                          aTAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCt                                                                                                     >  5:193039/1‑149 (MQ=255)                                              ttAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGa                                                                                                              >  1:10191/1‑136 (MQ=255)                                              ttAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGa                                                                                                              <  2:10191/136‑1 (MQ=255)                                              ttAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAg                                                                                                 <  5:217540/149‑1 (MQ=255)                                                            ttcttGATTGCTATAATCATCGAACCCATTTTGGATAATGTTATGTCCCGTCTCGCTTAATTCCGCCTGCTCGAACAACTGCTCcgcctgttgggctgcgagctgttgttcgagcaggcggaattcagcg                                                                                                       <  6:1641‑M1/130‑47 (MQ=255)                                                              cttGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAAttt                                                                                  <  5:291324/148‑1 (MQ=255)                                                                tGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATgg                                                                                       <  3:224420/141‑1 (MQ=255)                                                                tGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATgg                                                                                       >  4:224420/1‑141 (MQ=255)                                                                tGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAAttt                                                                                  >  3:100067/1‑146 (MQ=255)                                                                tGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAAttt                                                                                  <  4:100067/146‑1 (MQ=255)                                                                 gATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGaa                                                                               >  7:111094/1‑148 (MQ=255)                                                                     gCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGa                                                                           <  6:193039/148‑1 (MQ=255)                                                                      cTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACg                                                                            >  5:326503/1‑146 (MQ=255)                                                                      cTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAg                                                                         <  3:13979/149‑1 (MQ=255)                                                                       tAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCcgccagttgggctgcgagctgttgttc                                                                                                                          <  5:56848‑M1/100‑28 (MQ=255)                                                                       tAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCcgccagttgggctgcgagctgttgttc                                                                                                                          >  6:56848‑M1/1‑73 (MQ=255)                                                                           atcatcGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTgcg                                                                    >  1:47026/1‑149 (MQ=255)                                                                                cGAACCCAATTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGAACGAACAACAGCTCGCAGACCAACTGG‑CGGAGCTTGAAGCGCTGAAAAATGACTATGCCATGAAGCAGGAAATGGAATTTGAAACGAAGCTGCTCAGtt                                                               >  3:248096/1‑149 (MQ=255)                                                                                 gAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGttt                                                              >  5:247499/1‑149 (MQ=255)                                                                                  aaCCCATTTTGGAGAATCTTATGTCCCTTCTCTCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTg                                                             <  5:39275/149‑1 (MQ=255)                                                                                    cccATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCt                                                           <  6:326503/149‑1 (MQ=255)                                                                                        ttttGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAAc                                                       <  5:151669/149‑1 (MQ=255)                                                                                        ttttGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAAc                                                       >  4:285731/1‑149 (MQ=255)                                                                                          ttGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACg                                                      <  8:111094/148‑1 (MQ=255)                                                                                                aaTCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATgg                                               >  7:245424/1‑149 (MQ=255)                                                                                                  tCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAGTGGAATTTGAAACGa                                                                           >  1:1259/1‑119 (MQ=255)                                                                                                  tCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAGTGGAATTTGAAACGa                                                                           <  2:1259/119‑1 (MQ=255)                                                                                                      aTGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTAAgg                                         >  4:63282/1‑149 (MQ=255)                                                                                                         tCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCt                                      >  6:145710/1‑149 (MQ=255)                                                                                                          cccGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGGAGGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCt                                      >  1:86179/1‑149 (MQ=255)                                                                                                                 cGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACAGG‑CGgagcagttgttcgagcaggcggaattaagcgagacgggacataacattatccaaaatgggttcgatgattatagcaatcaagaa                                                 <  6:1641‑M2/130‑85 (MQ=255)                                                                                                                  gCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAg                              <  3:285731/148‑1 (MQ=255)                                                                                                                    tGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAgtgg                           >  3:333443/1‑149 (MQ=255)                                                                                                                                  tCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCt                                                           <  5:72991/103‑1 (MQ=255)                                                                                                                                  tCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCt                                                           >  6:72991/1‑103 (MQ=255)                                                                                                                                  tCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGAt             >  1:202836/1‑149 (MQ=255)                                                                                                                                   cGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATc            >  3:209939/1‑149 (MQ=255)                                                                                                                                    gAACAACAGCTCGCAGCCCAACTGG‑CGgagctgttgttcgagcaggcggaattcagcgagacgggacataagattctccaaaatgggttcgatgatttta                                                            <  5:56848‑M2/100‑74 (MQ=255)                                                                                                                                    gAACAACAGCTCGCAGCCCAACTGG‑CGgagctgttgttcgagcaggcggaattcagcgagacgggacataagattctccaaaatgggttcgatgatttta                                                            >  6:56848‑M2/1‑27 (MQ=255)                                                                                                                                    gAACAACAGCTCGCAGCACACCTTG‑CGGCGCTGGAAGCGCTGAAACATGACTCTGCCCTGCAGCAGGAAATGGAAGTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATcc           <  8:294808/149‑1 (MQ=255)                                                                                                                                       caacaGCTCGCAGCCCAACTGG‑CGgagctgttgttcgagcaggcggaattcagcgagacgggacataagattctccaaaatgggttcgatgattttagcaatcaagaaagaaagcgtgctaactatcttgatcccacatgcctgaatcg        <  3:212630‑M2/149‑126 (MQ=255)                                                                                                                                        aacaGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAgtggtg                         <  6:318729/131‑1 (MQ=255)                                                                                                                                        aacaGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAgtggtg                         >  5:318729/1‑131 (MQ=255)                                                                                                                                          caGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGc     <  4:333443/149‑1 (MQ=255)                                                                                                                                           aGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGCg    >  8:48267/1‑149 (MQ=255)                                                                                                                                           aGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCGGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAcgcg    >  7:237924/1‑149 (MQ=255)                                                                                                                                             cTCcgccagttgggctgcgagctgttgttcgagcaggcggaattcagcgagacgggacataagattctccaaaatgggttcgatgattttagcaatcaagaaagaaagcgtgctaactatcttgatcccacatgcctgaatcggcaatc   <  5:132668‑M1/149‑147 (MQ=255)                                                                                                                                             cTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTACTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGCGGt  <  2:12100/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    GCTCAGCCTCGTGATTGCCGATTCAGGCATGTGGGATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGCGGT  >  NC_002947/22070‑22358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.