New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 22212	45 (0.830)	4 (0.080)	4/248	NT	8.1%	coding (42/360 nt)	PP_0017	transcriptional regulator
	?	NC_002947	= 22227	48 (0.930)					coding (57/360 nt)	PP_0017	transcriptional regulator

GATTGCCGATTCAGGCATGTGGGATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGCGGTGGCTTCCACTGATATGG  >  NC_002947/22082‑22375                                                                                                                                                   |                                                                                                                                                     gATTGCCGATTCAGGCATGTGGGATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGgag                                                                                                                                                   <  5:132668‑M2/149‑4 (MQ=255)          ttCAGGCATGTGGGATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAgcg                                                                                                                                          <  3:239658/149‑1 (MQ=255)                    tgGGATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAAt                                                                                                                                 <  6:191633/148‑1 (MQ=255)                      ggATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGAc                                                                                                                              >  6:217540/1‑149 (MQ=255)                        aTCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGActc                                                                                                                            >  6:39275/1‑149 (MQ=255)                           aaGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTg                                                                                                                          <  6:132668/148‑1 (MQ=255)                            aGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGcc                                                                                                                        >  4:13979/1‑149 (MQ=255)                              aTAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCt                                                                                                                      >  5:193039/1‑149 (MQ=255)                                  ttAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGa                                                                                                                               >  1:10191/1‑136 (MQ=255)                                  ttAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGa                                                                                                                               <  2:10191/136‑1 (MQ=255)                                  ttAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAg                                                                                                                  <  5:217540/149‑1 (MQ=255)                                                  cttGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAAttt                                                                                                   <  5:291324/148‑1 (MQ=255)                                                    tGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATgg                                                                                                        <  3:224420/141‑1 (MQ=255)                                                    tGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATgg                                                                                                        >  4:224420/1‑141 (MQ=255)                                                    tGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAAttt                                                                                                   >  3:100067/1‑146 (MQ=255)                                                    tGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAAttt                                                                                                   <  4:100067/146‑1 (MQ=255)                                                     gATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGaa                                                                                                >  7:111094/1‑148 (MQ=255)                                                         gCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGa                                                                                            <  6:193039/148‑1 (MQ=255)                                                          cTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACg                                                                                             >  5:326503/1‑146 (MQ=255)                                                          cTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAg                                                                                          <  3:13979/149‑1 (MQ=255)                                                               atcatcGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTgcg                                                                                     >  1:47026/1‑149 (MQ=255)                                                                    cGAACCCAATTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGAACGAACAACAGCTCGCAGACCAACTGG‑CGGAGCTTGAAGCGCTGAAAAATGACTATGCCATGAAGCAGGAAATGGAATTTGAAACGAAGCTGCTCAGtt                                                                                >  3:248096/1‑149 (MQ=255)                                                                     gAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGttt                                                                               >  5:247499/1‑149 (MQ=255)                                                                      aaCCCATTTTGGAGAATCTTATGTCCCTTCTCTCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTg                                                                              <  5:39275/149‑1 (MQ=255)                                                                        cccATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCt                                                                            <  6:326503/149‑1 (MQ=255)                                                                            ttttGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAAc                                                                        >  4:285731/1‑149 (MQ=255)                                                                            ttttGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAAc                                                                        <  5:151669/149‑1 (MQ=255)                                                                              ttGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACg                                                                       <  8:111094/148‑1 (MQ=255)                                                                                    aaTCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATgg                                                                >  7:245424/1‑149 (MQ=255)                                                                                      tCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAGTGGAATTTGAAACGa                                                                                            >  1:1259/1‑119 (MQ=255)                                                                                      tCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAGTGGAATTTGAAACGa                                                                                            <  2:1259/119‑1 (MQ=255)                                                                                          aTGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTAAgg                                                          >  4:63282/1‑149 (MQ=255)                                                                                             tCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCt                                                       >  6:145710/1‑149 (MQ=255)                                                                                              cccGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGGAGGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCt                                                       >  1:86179/1‑149 (MQ=255)                                                                                                     cGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACAGG‑CGgagcagttgttcgagcaggcggaattaagcgagacgggacataacattatccaaaatgggttcgatgattatagcaatcaagaa                                                                  <  6:1641‑M2/130‑85 (MQ=255)                                                                                                      gCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAg                                               <  3:285731/148‑1 (MQ=255)                                                                                                        tGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAgtgg                                            >  3:333443/1‑149 (MQ=255)                                                                                                                      tCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCt                                                                            >  6:72991/1‑103 (MQ=255)                                                                                                                      tCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCt                                                                            <  5:72991/103‑1 (MQ=255)                                                                                                                      tCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGAt                              >  1:202836/1‑149 (MQ=255)                                                                                                                       cGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATc                             >  3:209939/1‑149 (MQ=255)                                                                                                                        gAACAACAGCTCGCAGCCCAACTGG‑CGgagctgttgttcgagcaggcggaattcagcgagacgggacataagattctccaaaatgggttcgatgatttta                                                                             >  6:56848‑M2/1‑27 (MQ=255)                                                                                                                        gAACAACAGCTCGCAGCCCAACTGG‑CGgagctgttgttcgagcaggcggaattcagcgagacgggacataagattctccaaaatgggttcgatgatttta                                                                             <  5:56848‑M2/100‑74 (MQ=255)                                                                                                                        gAACAACAGCTCGCAGCACACCTTG‑CGGCGCTGGAAGCGCTGAAACATGACTCTGCCCTGCAGCAGGAAATGGAAGTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATcc                            <  8:294808/149‑1 (MQ=255)                                                                                                                           caacaGCTCGCAGCCCAACTGG‑CGgagctgttgttcgagcaggcggaattcagcgagacgggacataagattctccaaaatgggttcgatgattttagcaatcaagaaagaaagcgtgctaactatcttgatcccacatgcctgaatcg                         <  3:212630‑M2/149‑126 (MQ=255)                                                                                                                            aacaGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAgtggtg                                          <  6:318729/131‑1 (MQ=255)                                                                                                                            aacaGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAgtggtg                                          >  5:318729/1‑131 (MQ=255)                                                                                                                              caGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGc                      <  4:333443/149‑1 (MQ=255)                                                                                                                               aGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGCg                     >  8:48267/1‑149 (MQ=255)                                                                                                                               aGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCGGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAcgcg                     >  7:237924/1‑149 (MQ=255)                                                                                                                                 cTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTACTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGCGGt                   <  2:12100/149‑1 (MQ=255)                                                                                                                                    gCATCCCTACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGTAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGCGGTgg                 <  4:248096/148‑1 (MQ=255)                                                                                                                                          cAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGCGGTGGCTTCCAc          <  2:86179/149‑1 (MQ=255)                                                                                                                                              tGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGCGGTGGCTTCCACTGa       >  2:282661/1‑148 (MQ=255)                                                                                                                                                g‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGCGGTGGCTTCCACTGatat    >  4:151279/1‑149 (MQ=255)                                                                                                                                                g‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAAATTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGCGGTGGCTTCCACTGat      <  1:282661/147‑1 (MQ=255)                                                                                                                                                   ggAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGCGGTGGCTTCCACTGATATgg  >  7:188902/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GATTGCCGATTCAGGCATGTGGGATCAAGATAGTTAGCACGCTTTCTTTCTTGATTGCTAAAATCATCGAACCCATTTTGGAGAATCTTATGTCCCGTCTCGCTGAATTCCGCCTGCTCGAACAACAGCTCGCAGCCCAACTGG‑CGGAGCTGGAAGCGCTGAAAAATGACTCTGCCCTGAAGCAGGAAATGGAATTTGAAACGAAGCTGCGCAGTTTGCTCAACGAGTATGGCTACGGCCTGCGCCAAGTGGTGCTGATCCTCGATCCGCAAGCGGTGGCTTCCACTGATATGG  >  NC_002947/22082‑22375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.