New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	747817 =	52 (0.960)	3 (0.060)	3/250	NT	5.9%	coding (151/216 nt)	PP_5448	hypothetical protein
	?	NC_002947	747850 =	45 (0.870)					coding (184/216 nt)	PP_5448	hypothetical protein

ATGCGCGCCAATCTAGACGAGCTGGTGATCGTGAGCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACGCT  >  NC_002947/747670‑747958                                                                                                                                                    |                                                                                                                                               atgCGCGCCAATCTAGACGAGCTGGTGATCGTGAGCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTcgacg                                                                                                                                                <  8:114662/148‑1 (MQ=255)  tgCGCGCCAATCTAGACGAGCTGGTGATCGTGAGCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACAGTATGCCGATGCTGTTGCGGCTcgacga                                                                                                                                               <  6:142670/148‑1 (MQ=255)          aaTCTAGACGAGCTGGTGATCGTGAGCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCgcgc                                                                                                                                      <  7:324119/149‑1 (MQ=255)            tCTAGACGAGCTGGTGATCGTGAGCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGcc                                                                                                                                     >  4:256355/1‑148 (MQ=255)              tAGACGAGCTGGTGATCGTTAGCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGa                                                                                                                                   <  5:85903/148‑1 (MQ=255)               aGACGAGCTGGTGATCGTGAGCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGc                                                                                                                                 >  4:163519/1‑149 (MQ=255)                gACGAGCTGGTGATCGTGAGCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCgc                                                                                                                                   >  6:85903/1‑145 (MQ=255)                gACGAGCTGGTGATCGTGAGCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCg                                                                                                                                    <  8:294624/145‑1 (MQ=255)                gACGAGCTGGGGAGCGTGAGCTGTTTGTTTCCAGCTATGAGGTGGGCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGa                                                                                                                                   <  7:304205/146‑1 (MQ=255)                        ggTGATCGTGAGCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTcg                                                                                                                        >  1:201556/1‑149 (MQ=255)                                   gCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAAc                                                                                                             <  7:59967/149‑1 (MQ=255)                                     tgtttgttTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACca                                                                                                           <  8:35187/149‑1 (MQ=255)                                       tttgtttCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACcaca                                                                                                         >  6:343393/1‑149 (MQ=255)                                       agcgtacgcataacattcttccattgagtaattgtcgcctaaaggcgatgcgtcacagagcgatatcactttaacatcatccatctaggtgatctggctccatgtggttGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACcaca                                                                                                         >  7:215753‑M1/110‑149 (MQ=255)                                          gtttCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATg                                                                                                       >  1:77031/1‑148 (MQ=255)                                           tttCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATgg                                                                                                      <  4:144023/148‑1 (MQ=255)                                           tttCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGa                                                                                                     <  2:77031/149‑1 (MQ=255)                                               cAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGcc                                                                                                  <  2:73908/148‑1 (MQ=255)                                                           ggtCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAgat                                                                                    >  8:183649/1‑149 (MQ=255)                                                              ttgagtaattgtcgcctaaaggcgatgcgtctcagagcgatatcactttaacatcatccatctaggtgatctggctccatgtggttGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCaa                                                                                                              >  7:306819‑M1/87‑121 (MQ=255)                                                              ttgagtaattgtcgcctaaaggcgatgcgtctcagagcgatatcactttaacatcatccatctaggtgatctggctccatgtggttGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCaa                                                                                                              <  8:306819‑M1/35‑1 (MQ=255)                                                                gCTTCTATTGCGCGATCCGTGCTCATGGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAgatggat                                                                                >  1:184660/1‑148 (MQ=255)                                                                     tATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGt                                                                           >  6:184013/1‑148 (MQ=255)                                                                       ttGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGtt                                                                          <  7:183649/147‑1 (MQ=255)                                                                       ttGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTa                                                                         >  8:59930/1‑148 (MQ=255)                                                                       ttGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTa                                                                         >  3:85444/1‑148 (MQ=255)                                                                         gcgcGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTaaa                                                                       <  3:256355/148‑1 (MQ=255)                                                                          cgcgATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAg                                                                      <  5:343393/148‑1 (MQ=255)                                                                          cgcgATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGt                                                                     >  7:215070/1‑149 (MQ=255)                                                                           gcgATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGAAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGt                                                                     >  3:40612/1‑148 (MQ=255)                                                                                   tGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGct                                                            <  3:163519/149‑1 (MQ=255)                                                                                      tCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGc                                                                                                   <  8:184433/108‑1 (MQ=255)                                                                                      tCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGc                                                                                                   >  7:184433/1‑108 (MQ=255)                                                                                         tCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGa                                                      <  8:215070/149‑1 (MQ=255)                                                                                            ccAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACg                                                    >  8:293365/1‑148 (MQ=255)                                                                                               gagagGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATc                                                >  1:105634/1‑149 (MQ=255)                                                                                                 tagGGTAACGTCATTCGCTTGTACAGTATGACGATGCTGTTGCCGATCGACGAGTTTCGCGCCGAGCTCTTTGTCTCGCAAATCAACCCCATCGAGCCAGA‑TCACCTAGATGTATTAAGTTAAAGTGCTATAGATCTGTGCCGCATCGc                                              >  8:40215/2‑149 (MQ=255)                                                                                                  agGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTc                                                                                                                         >  8:54528/1‑74 (MQ=255)                                                                                                  agGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTc                                                                                                                         <  7:54528/74‑1 (MQ=255)                                                                                                  agGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGcc                                             >  3:185655/1‑149 (MQ=255)                                                                                                     gTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCtt                                           >  2:4240/1‑148 (MQ=255)                                                                                                             cTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACa                                  <  5:184013/149‑1 (MQ=255)                                                                                                                      tACAGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCATA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCaa                         <  4:40612/149‑1 (MQ=255)                                                                                                                        ccGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATg                       <  2:201556/149‑1 (MQ=255)                                                                                                                         cGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATgg                      <  2:105634/149‑1 (MQ=255)                                                                                                                              gCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGgaaga                  <  4:85444/148‑1 (MQ=255)                                                                                                                               ccGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGACTCACCTAGATGGATGATGTTAAAGTGATATCGctct                                                          <  1:56931/108‑1 (MQ=255)                                                                                                                               ccGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGctct                                                          >  2:56931/1‑107 (MQ=255)                                                                                                                               ccGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAAt                        <  3:197345/141‑1 (MQ=255)                                                                                                                               ccGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAAt                        >  4:197345/1‑141 (MQ=255)                                                                                                                                        ttGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGt       <  4:185655/149‑1 (MQ=255)                                                                                                                                          gCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGata                                                                 >  6:18261/1‑89 (MQ=255)                                                                                                                                          gCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGata                                                                 <  5:18261/89‑1 (MQ=255)                                                                                                                                           cGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACg    >  3:18474/1‑149 (MQ=255)                                                                                                                                           cGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACg    >  6:254699/1‑149 (MQ=255)                                                                                                                                            ggCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACGc   <  4:18474/149‑1 (MQ=255)                                                                                                                                             gCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACGCt  <  5:254699/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                               ATGCGCGCCAATCTAGACGAGCTGGTGATCGTGAGCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACGCT  >  NC_002947/747670‑747958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.