New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	747817 =	52 (0.960)	3 (0.060)	3/250	NT	5.9%	coding (151/216 nt)	PP_5448	hypothetical protein
	?	NC_002947	747850 =	45 (0.870)					coding (184/216 nt)	PP_5448	hypothetical protein

GCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACG‑CTATTTAAATTTGCCTCAGTAGCTGTTGCCGGTGCCGTCAT  >  NC_002947/747704‑747997                                                                                                                                                   |                                                                                                                                                      gCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAAc                                                                                                                                                     <  7:59967/149‑1 (MQ=255)   tgtttgttTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACca                                                                                                                                                   <  8:35187/149‑1 (MQ=255)     tttgtttCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACcaca                                                                                                                                                 >  6:343393/1‑149 (MQ=255)     agcgtacgcataacattcttccattgagtaattgtcgcctaaaggcgatgcgtcacagagcgatatcactttaacatcatccatctaggtgatctggctccatgtggttGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACcaca                                                                                                                                                 >  7:215753‑M1/110‑149 (MQ=255)        gtttCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATg                                                                                                                                               >  1:77031/1‑148 (MQ=255)         tttCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATgg                                                                                                                                              <  4:144023/148‑1 (MQ=255)         tttCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGa                                                                                                                                             <  2:77031/149‑1 (MQ=255)             cAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGcc                                                                                                                                          <  2:73908/148‑1 (MQ=255)                         ggtCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAgat                                                                                                                            >  8:183649/1‑149 (MQ=255)                            ttgagtaattgtcgcctaaaggcgatgcgtctcagagcgatatcactttaacatcatccatctaggtgatctggctccatgtggttGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCaa                                                                                                                                                      <  8:306819‑M1/35‑1 (MQ=255)                            ttgagtaattgtcgcctaaaggcgatgcgtctcagagcgatatcactttaacatcatccatctaggtgatctggctccatgtggttGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCaa                                                                                                                                                      >  7:306819‑M1/87‑121 (MQ=255)                              gCTTCTATTGCGCGATCCGTGCTCATGGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAgatggat                                                                                                                        >  1:184660/1‑148 (MQ=255)                                   tATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGt                                                                                                                   >  6:184013/1‑148 (MQ=255)                                     ttGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGtt                                                                                                                  <  7:183649/147‑1 (MQ=255)                                     ttGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTa                                                                                                                 >  8:59930/1‑148 (MQ=255)                                     ttGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTa                                                                                                                 >  3:85444/1‑148 (MQ=255)                                       gcgcGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTaaa                                                                                                               <  3:256355/148‑1 (MQ=255)                                        cgcgATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAg                                                                                                              <  5:343393/148‑1 (MQ=255)                                        cgcgATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGt                                                                                                             >  7:215070/1‑149 (MQ=255)                                         gcgATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGAAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGt                                                                                                             >  3:40612/1‑148 (MQ=255)                                                 tGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGct                                                                                                    <  3:163519/149‑1 (MQ=255)                                                    tCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGc                                                                                                                                           <  8:184433/108‑1 (MQ=255)                                                    tCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGc                                                                                                                                           >  7:184433/1‑108 (MQ=255)                                                       tCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGa                                                                                              <  8:215070/149‑1 (MQ=255)                                                          ccAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACg                                                                                            >  8:293365/1‑148 (MQ=255)                                                             gagagGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATc                                                                                        >  1:105634/1‑149 (MQ=255)                                                               tagGGTAACGTCATTCGCTTGTACAGTATGACGATGCTGTTGCCGATCGACGAGTTTCGCGCCGAGCTCTTTGTCTCGCAAATCAACCCCATCGAGCCAGA‑TCACCTAGATGTATTAAGTTAAAGTGCTATAGATCTGTGCCGCATCGc                                                                                      >  8:40215/2‑149 (MQ=255)                                                                agGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGcc                                                                                     >  3:185655/1‑149 (MQ=255)                                                                   gTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCtt                                                                                   >  2:4240/1‑148 (MQ=255)                                                                           cTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACa                                                                          <  5:184013/149‑1 (MQ=255)                                                                                    tACAGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCATA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCaa                                                                 <  4:40612/149‑1 (MQ=255)                                                                                      ccGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATg                                                               <  2:201556/149‑1 (MQ=255)                                                                                       cGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATgg                                                              <  2:105634/149‑1 (MQ=255)                                                                                            gCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGgaaga                                                          <  4:85444/148‑1 (MQ=255)                                                                                             ccGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGACTCACCTAGATGGATGATGTTAAAGTGATATCGctct                                                                                                  <  1:56931/108‑1 (MQ=255)                                                                                             ccGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGctct                                                                                                  >  2:56931/1‑107 (MQ=255)                                                                                             ccGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAAt                                                                <  3:197345/141‑1 (MQ=255)                                                                                             ccGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAAt                                                                >  4:197345/1‑141 (MQ=255)                                                                                                      ttGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGt                                               <  4:185655/149‑1 (MQ=255)                                                                                                        gCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGata                                                                                                         >  6:18261/1‑89 (MQ=255)                                                                                                        gCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGata                                                                                                         <  5:18261/89‑1 (MQ=255)                                                                                                         cGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACg                                            >  3:18474/1‑149 (MQ=255)                                                                                                         cGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACg                                            >  6:254699/1‑149 (MQ=255)                                                                                                          ggCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACG‑c                                          <  4:18474/149‑1 (MQ=255)                                                                                                           tgtggttgagttgcgcgacaaagagctcggcgcgaaactcAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACG‑Ct                                         >  7:215753‑M2/41‑149 (MQ=255)                                                                                                           gCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACG‑Ct                                         <  5:254699/149‑1 (MQ=255)                                                                                                                ttgagttgcgcgacaaagagctcggcgcgaaactcAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGAGACGCATCGCCTTTAGGCGACAATTACTCaa                                                                 <  8:306819‑M2/86‑1 (MQ=255)                                                                                                                ttgagttgcgcgacaaagagctcggcgcgaaactcAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGAGACGCATCGCCTTTAGGCGACAATTACTCaa                                                                 >  7:306819‑M2/36‑121 (MQ=255)                                                                                                                     TTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACG‑CTATTTAAAttt                               >  2:184660‑M1/1‑149 (MQ=255)                                                                                                                        cgcgCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACG‑CTATTTAAATTTGc                             <  7:59930/148‑1 (MQ=255)                                                                                                                          cgcCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACG‑CTATTTAAATTTGCCt                           >  2:268508/1‑148 (MQ=255)                                                                                                                                 ctctTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACG‑CTATTTAAATTTGCCTCAGTAGCt                   <  1:268508/149‑1 (MQ=255)                                                                                                                                      tGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACGCCTATTTAAATTTGCCTCAGTAGCTGt                 <  1:4240/147‑1 (MQ=255)                                                                                                                                       gTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACG‑CTATTTAAATTTGCCTCCGTAGCTGTTGcc             >  4:230283/1‑149 (MQ=255)                                                                                                                                           cgcAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACG‑CTATTTAAATTTGCCTCAGTAGCTGTTGCCGGTg         >  7:178379/1‑149 (MQ=255)                                                                                                                                            gcAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACG‑CTATTTAAATTTGCCTCAGTAGCTGTTGCCGGTGc        <  3:219618/149‑1 (MQ=255)                                                                                                                                                   aaCCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACG‑CTATTTAAATTTGCCTCAGTAGCTGTTGCCGGTGCCGTCAt  >  4:297721/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                      GCTGTTTGTTTCCAGCTATGAGGTGGTCAGCTTCTATTGCGCGATCCGTGCTCATCGCCAGAGAGGGTAACGTCCTTCGCTTGTACCGTATGCCGATGCTGTTGCGGCTCGACGAGTTTCGCGCCGAGCTCTTTGTCGCGCAACTCAACCACATGGAGCCAGA‑TCACCTAGATGGATGATGTTAAAGTGATATCGCTCTGTGACGCATCGCCTTTAGGCGACAATTACTCAATGGAAGAATGTTATGCGTACG‑CTATTTAAATTTGCCTCAGTAGCTGTTGCCGGTGCCGTCAT  >  NC_002947/747704‑747997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.