New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 760073 | 49 (0.910) | 3 (0.060) | 3/248 | NT | 6.3% | coding (212/228 nt) | PP_5453 | hypothetical protein |
? | NC_002947 | = 760099 | 43 (0.830) | intergenic (+10/+55) | PP_5453/PP_0652 | hypothetical protein/gluconate transporter |
GAGGCCCTGGTCCAGCACGACGAAATGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATGGAC > NC_002947/759925‑760220 | gAGGCCCTGGTCCAGCACGACGAAATGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCA < 5:107107‑M1/149‑1 (MQ=255) gCCCTGGTCCAGCACGACGAAATGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGa < 1:99739/149‑1 (MQ=255) ccTGGTCCAGCACGACGAAATGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATc > 8:316922/1‑149 (MQ=255) cTGGTCCAGCACGACGAAATGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCt > 3:56361/1‑149 (MQ=255) tCCAGCACGACGAAATGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAg < 4:56361/149‑1 (MQ=255) cAGCACGACGAAATGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCg > 2:150249/1‑149 (MQ=255) cAGCACGACGAAATGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCg > 4:4248/1‑149 (MQ=255) acgacgAAATGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAg < 7:68401/149‑1 (MQ=255) cgacgaAATGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAgg < 5:67963/149‑1 (MQ=255) gacgaAATGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGc < 1:150249/149‑1 (MQ=255) gacgaAATGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGc > 1:59286/1‑149 (MQ=255) cgaAATGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACACGGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGc > 1:258668/1‑148 (MQ=255) aaTGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGa < 3:4248/148‑1 (MQ=255) tCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGtg < 4:36940‑M2/149‑3 (MQ=255) gAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGtgct < 2:287303‑M2/149‑5 (MQ=255) tGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGa < 8:250352/149‑1 (MQ=255) gCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAg < 7:316922/149‑1 (MQ=255) gAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCTGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAccgatctggcctaacgctgcagatcctgctcgcttc < 7:201147‑M1/149‑37 (MQ=255) gAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAgg < 3:36940/148‑1 (MQ=255) acaACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTggg > 6:320528/1‑149 (MQ=255) aaCCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTATTGGAACGATGCGAGGAGGATCTGCAGCGTTAGGGCCGCGCGGTGCTCGAGGGTGGGGc > 8:80371/1‑149 (MQ=255) gcgGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGAt < 4:119702/149‑1 (MQ=255) cTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTggg < 5:320528/149‑1 (MQ=255) tGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTggg < 5:84794/137‑1 (MQ=255) tGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTggg > 6:84794/1‑137 (MQ=255) tGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATATGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTgggg > 6:96264/1‑149 (MQ=255) gTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAg > 6:207209/1‑110 (MQ=255) gTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGgctg > 1:239126/1‑149 (MQ=255) ttttCGCAACAC‑GGCCGGTATCCATCAGGCTATCCGGATCATCAGCCGGTTGGCCTAGGAGGACCCAAACTTGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGgctgc < 1:111909/149‑1 (MQ=255) aaCAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAg > 7:32971/1‑149 (MQ=255) aaCAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAg > 5:129409/1‑149 (MQ=255) ccGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGAGCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCGCAGCAGccccaat < 7:206065/149‑4 (MQ=255) cGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGtt < 6:353602/149‑1 (MQ=255) cGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGGGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGtt < 5:271149/149‑1 (MQ=255) gTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGa > 1:303924/1‑149 (MQ=255) cATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAccgatctggcctaacgctgcagatc > 4:299761‑M1/1‑71 (MQ=255) cATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAccgatctggcctaacgctgcagatc < 3:299761‑M1/96‑26 (MQ=255) cATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGa < 4:53633/149‑1 (MQ=255) cATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAATGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGa < 1:287303/149‑1 (MQ=255) aTCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGCCTGCTGCGCAGCCCCCGTTGACTCGAg > 7:130813/1‑149 (MQ=255) gCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGc > 4:45003/1‑83 (MQ=255) gCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGc < 3:45003/83‑1 (MQ=255) gCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGAGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGc > 4:123506/1‑83 (MQ=255) gCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGAGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGc < 3:123506/83‑1 (MQ=255) cGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAAc < 3:198483/149‑1 (MQ=255) aGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGc < 8:32971/148‑1 (MQ=255) ccGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGc < 2:59286/149‑1 (MQ=255) cGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTAAACCTATGGTGATGgcagca > 4:164101/1‑149 (MQ=255) gCCAGTGAGCAGTGTGGTAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCGGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATtcaa < 3:164101/148‑1 (MQ=255) tgGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCAt < 2:239126/149‑1 (MQ=255) gAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCACCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAg > 3:279890/1‑149 (MQ=255) aaTGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCaa > 5:206649/1‑148 (MQ=255) gAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAaccacc > 3:179997/1‑149 (MQ=255) aCGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACAACAACACCACCATCCGCCAAACCACCg > 8:71397/1‑148 (MQ=255) gAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGtgctcgcttcgttccattaccttcccacactgctcactggccaaccggctgatgatccggatcgcctgatggatacaggccgtgttgcgaaaactcagccgcgggttgtgttc < 7:201147‑M2/149‑114 (MQ=255) gAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGCTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCa > 1:243042/1‑149 (MQ=255) aaGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGt > 7:170150/1‑46 (MQ=255) aaGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGt < 8:170150/46‑1 (MQ=255) gAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATg > 2:172712/1‑149 (MQ=255) gAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATg > 2:331289/1‑149 (MQ=255) aGCAccgatctggcctaacgctgcagatcctgctcgcttcgttccattaccttcccacactgctcactggccaaccggctgatgatccggatcgcctgatggataccggccgtgttgcgaaaactcagccgcgggttgtgttcgcactc < 2:287303‑M1/149‑146 (MQ=255) aGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATgg < 5:96264/149‑1 (MQ=255) cAccgatctggcctaacgctgcagatcctgctcgcttcgttccattaccttcccacactgctcactggccaaccggctgatgatccggatcgcctgatggataccggccgtgttgcgaaaactcagccgcgggttgtgttcgcactcga < 4:36940‑M1/149‑148 (MQ=255) | GAGGCCCTGGTCCAGCACGACGAAATGCTCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACAC‑GGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATGGAC > NC_002947/759925‑760220 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |