New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 760073	49 (0.910)	3 (0.060)	3/248	NT	6.3%	coding (212/228 nt)	PP_5453	hypothetical protein
	?	NC_002947	= 760099	43 (0.830)					intergenic (+10/+55)	PP_5453/PP_0652	hypothetical protein/gluconate transporter

TCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATGGACTGCACCACCGAAATGGTCTTGGTGG  >  NC_002947/759953‑760245                                                                                                                                                   |                                                                                                                                                   tCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGtg                                                                                                                                                  <  4:36940‑M2/149‑3 (MQ=255)   gAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGtgct                                                                                                                                                <  2:287303‑M2/149‑5 (MQ=255)      tGCGAACACAACCCGCGGCTGAGTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGa                                                                                                                                             <  8:250352/149‑1 (MQ=255)       gCGAACACAACCCGCGGCTGAGTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAg                                                                                                                                            <  7:316922/149‑1 (MQ=255)         gAACACAACCCGCGGCTGAGTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAgg                                                                                                                                           <  3:36940/148‑1 (MQ=255)             acaACCCGCGGCTGAGTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTggg                                                                                                                                      >  6:320528/1‑149 (MQ=255)               aaCCCGCGGCTGAGTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTATTGGAACGATGCGAGGAGGATCTGCAGCGTTAGGGCCGCGCGGTGCTCGAGGGTGGGGc                                                                                                                                    >  8:80371/1‑149 (MQ=255)                    gcgGCTGAGTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGAt                                                                                                                               <  4:119702/149‑1 (MQ=255)                        cTGAGTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTggg                                                                                                                           <  5:320528/149‑1 (MQ=255)                         tGAGTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTggg                                                                                                                                      >  6:84794/1‑137 (MQ=255)                         tGAGTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTggg                                                                                                                                      <  5:84794/137‑1 (MQ=255)                         tGAGTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATATGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTgggg                                                                                                                          >  6:96264/1‑149 (MQ=255)                            gTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGgctg                                                                                                                       >  1:239126/1‑149 (MQ=255)                             ttttCGCAACACGGCCGGTATCCATCAGGCTATCCGGATCATCAGCCGGTTGGCCTAGGAGGACCCAAACTTGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGgctgc                                                                                                                      <  1:111909/149‑1 (MQ=255)                                    aaCACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAg                                                                                                               >  7:32971/1‑149 (MQ=255)                                    aaCACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAg                                                                                                               >  5:129409/1‑149 (MQ=255)                                           ccGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGAGCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCGCAGCAGccccaat                                                                                                        <  7:206065/149‑4 (MQ=255)                                            cGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGtt                                                                                                       <  6:353602/149‑1 (MQ=255)                                            cGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGGGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGtt                                                                                                       <  5:271149/149‑1 (MQ=255)                                              gTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGa                                                                                                     >  1:303924/1‑149 (MQ=255)                                                   cATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGa                                                                                                <  4:53633/149‑1 (MQ=255)                                                   cATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAATGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGa                                                                                                <  1:287303/149‑1 (MQ=255)                                                    aTCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGCCTGCTGCGCAGCCCCCGTTGACTCGAg                                                                                               >  7:130813/1‑149 (MQ=255)                                                          cGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAAc                                                                                         <  3:198483/149‑1 (MQ=255)                                                                        aGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGc                                                                            <  8:32971/148‑1 (MQ=255)                                                                          ccGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGc                                                                         <  2:59286/149‑1 (MQ=255)                                                                           cGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTAAACCTATGGTGATGgcagca                                                                        >  4:164101/1‑149 (MQ=255)                                                                                 gCCAGTGAGCAGTGTGGTAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCGGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATtcaa                                                                   <  3:164101/148‑1 (MQ=255)                                                                                               tgGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCAt                                                    <  2:239126/149‑1 (MQ=255)                                                                                                  gAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCACCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAg                                                 >  3:279890/1‑149 (MQ=255)                                                                                                        aaTGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCaa                                            >  5:206649/1‑148 (MQ=255)                                                                                                            gAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAaccacc                                       >  3:179997/1‑149 (MQ=255)                                                                                                              aCGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACAACAACACCACCATCCGCCAAACCACCg                                      >  8:71397/1‑148 (MQ=255)                                                                                                                gAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGtgctcgcttcgttccattaccttcccacactgctcactggccaaccggctgatgatccggatcgcctgatggatacaggccgtgttgcgaaaactcagccgcgggttgtgttc                                   <  7:201147‑M2/149‑114 (MQ=255)                                                                                                                gAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGCTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCa                                   >  1:243042/1‑149 (MQ=255)                                                                                                                 aaGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGt                                                                                                                                         <  8:170150/46‑1 (MQ=255)                                                                                                                 aaGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGt                                                                                                                                         >  7:170150/1‑46 (MQ=255)                                                                                                                     gAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATg                              >  2:172712/1‑149 (MQ=255)                                                                                                                     gAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATg                              >  2:331289/1‑149 (MQ=255)                                                                                                                      aGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATgg                             <  5:96264/149‑1 (MQ=255)                                                                                                                           gATCTGCAGCGTTAGGCCAGATCGGtgctcgcttcgttccattaccttcccacactgctcactggccaaccggctgatgatccggatcgcctgatg                                                                             >  4:299761‑M2/1‑25 (MQ=255)                                                                                                                           gATCTGCAGCGTTAGGCCAGATCGGtgctcgcttcgttccattaccttcccacactgctcactggccaaccggctgatgatccggatcgcctgatg                                                                             <  3:299761‑M2/96‑72 (MQ=255)                                                                                                                             tCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATGGACTGcac                      >  2:126012/1‑149 (MQ=255)                                                                                                                                gCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGAAGGACTGcaccac                   >  1:344016/1‑149 (MQ=255)                                                                                                                                 cAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATGGACTGcacc                     <  2:258668/146‑1 (MQ=255)                                                                                                                                 cAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATGGACTGCaccacc                  >  8:99926/1‑149 (MQ=255)                                                                                                                                    cGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATGGGCTGCACCACCGa                >  6:66343/1‑148 (MQ=255)                                                                                                                                     gTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTAGAGTTGAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCTCCGCCACGAGGGACTGCACCACCGaaa              >  5:45319/1‑149 (MQ=255)                                                                                                                                     gTTAGGCATTATCTGTGATCGAGGGTGTGGCGATATTGGGGCTGCTGCGCTGCCGCGGTTGACTGGAGTTCAAACTATGGTGATTGCCGCATTCAACATCAACACCACCATCATCCAAACCAACGCCACGATGGAATTCACCACCGaaa              <  8:130813/149‑1 (MQ=255)                                                                                                                                          gCCCGATCGGGGCTCGAGGGTGGGGCCAGATTGGGGCTGCGGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCTCCGCCACGATGGACTGCACCACCGAAATGGTc         <  6:45319/149‑1 (MQ=255)                                                                                                                                            cAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATGGACTGCACCACCGAAATGGTCtt       >  6:180841/1‑149 (MQ=255)                                                                                                                                            cAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATGGACTGCACCACCGAAATGGTCtt       >  1:328458/1‑149 (MQ=255)                                                                                                                                             aGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCAGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGACGGACTGCACCACCGAAATGGTCTtg      <  7:80371/149‑1 (MQ=255)                                                                                                                                               aTCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGAAGGACTGCACCACCGAAATGGTCTtg      <  2:344016/147‑1 (MQ=255)                                                                                                                                                  ggTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATGGACTGCACCACCGAAATGGTCTtggtgg  <  1:126012/148‑1 (MQ=255)                                                                                                                                                   gTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCATTGACTCGAGTTCAACCTATGGTGATGGCCGCATtcaaca                                                                 >  2:274058/1‑84 (MQ=255)                                                                                                                                                   gTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCATTGACTCGAGTTCAACCTATGGTGATGGCCGCATtcaaca                                                                 <  1:274058/84‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   TCGAGTGCGAACACAACCCGCGGCTGAGTTTTCGCAACACGGCCGGTATCCATCAGGCGATCCGGATCATCAGCCGGTTGGCCAGTGAGCAGTGTGGGAAGGTAATGGAACGAAGCGAGCAGGATCTGCAGCGTTAGGCCAGATCGGTGCTCGAGGGTGGGGCCAGATTGGGGCTGCTGCGCAGCCCCCGTTGACTCGAGTTCAACCTATGGTGATGGCCGCATTCAACATCAACACCACCATCAGCCCAACCACCGCCACGATGGACTGCACCACCGAAATGGTCTTGGTGG  >  NC_002947/759953‑760245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.