| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1531769 | 21 (0.390) | 5 (0.110) | 3/212 | NT | 15.8% | coding (107/630 nt) | PP_1344 | hypothetical protein |
| ? | NC_002947 | = 1531817 | 36 (0.820) | coding (59/630 nt) | PP_1344 | hypothetical protein | |||||
TGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAA > NC_002947/1531622‑1531916 | tGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCgggg > 1:181291/1‑149 (MQ=255) gTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGa > 7:72390/1‑149 (MQ=255) cagcagccgGCGCCGCGGGCGCACCGGGCGCAGCCGGGCGGACGGGGGCTGGGCGGGGGCGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAAc < 8:2213/148‑1 (MQ=255) gcgcAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGc > 7:183796/1‑149 (MQ=255) cgggggCGCACGTGGCGCTGCTGGGCGGTCGGGGGCGGGGGGGGGGAGGGTGTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAgg < 8:183796/146‑1 (MQ=38) cgCGGGCCCCCCGGGCCCAGCTGGGCGGTCGGGGGGGGGGGGGGGGCGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAgg < 2:181291/148‑1 (MQ=37) atctggCGCACCTGGCGCCGCAGGGTGGACGGTGGCTGGGGGGGTGATGGTTTGTACGACATGGTGTTACGCTTGAAGTGACGTGGGCACAGT‑CTAAAATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGCAACCCGCTCCTGCCAgg < 2:227681/145‑1 (MQ=255) gCGGGCGCACCTGGCGCCGCCGGGCGCATGGTGGGTGGGCGGGGGCGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAggg < 8:193214/149‑1 (MQ=39) gcACCTGGCGCTGCTGGGCGGATGGGGGCGGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCg < 4:37692/149‑1 (MQ=39) ccACCGGCCGCTGCCGGGCTCACGGGGGCGGGGGGGGGCAGGGTCTGGCGCCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCg < 5:1861/148‑1 (MQ=25) gtGGCGCCGCGGGGGGGATGGGGGCGGGGCGGGCGCGGGTTTGTCGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTAt < 3:239994/148‑1 (MQ=38) gcagccGGGCGGACGGGGGCGGGGCGGGGGCGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGt < 2:46581/149‑1 (MQ=39) ggggAAGGGGGGTGGGGGGGGGTGGGTTTGTAGGCCAGGGGGGTACGCGTGAAGTGACGTCGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCgg < 2:147788/147‑1 (MQ=39) ggggcggggcggggGCGGGTTTGTAGGCCAGGGGGGTACGCGGGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGtgaacccgctcctacaagataccgataaccctggcaggagcgggttccc < 6:242871‑M1/146‑50 (MQ=255) gtggggggggggcgtgGGGTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAccc > 4:314985‑M2/6‑146 (MQ=255) gCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTATTCGCGGGGGGACCCGCTCCTGCCAGGGTTATCGGGATCTTGTAGGA‑GCGGGTTGAcccgcgca < 3:48158‑M2/147‑9 (MQ=255) gggAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTGCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaagcggc < 1:258900‑M2/149‑14 (MQ=255) ggAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCGGCCAGGGGTATCGGTAGCTTGTAGGA‑GCGGGTTGAcccgcgaagaggccg < 1:185618‑M2/149‑16 (MQ=255) gAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgc < 6:287156‑M2/138‑6 (MQ=255) gAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgc > 5:287156‑M2/1‑133 (MQ=255) tAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaa < 3:298138‑M2/132‑9 (MQ=255) tAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaa > 4:298138‑M2/1‑124 (MQ=255) aGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCGGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGc > 4:295552/1‑149 (MQ=255) gggTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccc < 2:74619‑M1/116‑51 (MQ=255) gggTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccc < 2:69674‑M1/116‑51 (MQ=255) gggTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccc > 1:69674‑M1/1‑66 (MQ=255) gggTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccc > 1:74619‑M1/1‑66 (MQ=255) gTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGa > 3:247354/1‑149 (MQ=255) gT‑CTAACATCTCCGTAGCCTGTGCGGGCCTCTTCGCGGGGTAACCGGCTCCTGCCAGGGTTATGGGTATCTTGTAGGA‑GCGGGTTCACCCGCTAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTg < 5:247080/149‑1 (MQ=38) ccGTTGCCTGTGCCGGCCTCATACCGGGGGTAACCGCACCAGCCAGCGTTTTAGGGATATTGTTTGA‑GCGGGTTGACCCCCGCAAACGCCCGCCCAGGCAGCCAAAGACCAGAATGGGTCTAGATACCTTTAATGTTGGCaaccagtt > 4:312628/1‑142 (MQ=255) cGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATAGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGa > 2:43876/1‑148 (MQ=255) cTGTGCCGGCCTCTTACCGGGGGAAACCCCTCCGGGCAGGGGTTTAGGTATCTTGTAGGA‑GCCGGTTGACCCGCGCAGAGGCCGGCACAGGCAGCCCAAGACAAGACTGGTTAACGATAGCTTTGATTTTGCCAAGCCTTTAACTCAGt > 4:299050/1‑149 (MQ=255) gtgCCGGCCTCTTAGCGGGGGAACCCCCTCCTGCCAGGGTTATCGGTATCTTGTAAGA‑GCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAAACAAAAAAGGTTCTAGATAGCTTTAATGTTTCCAATCCATTAACTAAGTg > 8:225360/1‑148 (MQ=25) cGGCCTCTTCGCGGGtcaacccgctcctacaagctaccgatacccctggccggagcgggttcccccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctacaaaccctcc < 1:185618‑M1/149‑135 (MQ=255) ggCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTTTCGGTATCTTGTAGGA‑GCGGGATCACCCGCGAAGCGGCCGGCACAGGCAGCCAAACACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCACTGAAAATg > 6:208327/1‑149 (MQ=255) gCCGCTTCGCGGGtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccccgcgaagaggccggcacaggcaacggagatgttagcactgtgcccacgtcacttcacgcgtacccccatggcctacaaaccctccc < 1:258900‑M1/149‑137 (MQ=255) ctctTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGGGGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGcc > 1:86027/1‑149 (MQ=255) ctctTCGCGGGGGAACCCGCTCCTGCCAGGGGTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGccc > 3:39067/1‑149 (MQ=255) ttCGCGGGtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggccta > 4:298138‑M1/1‑8 (MQ=255) ttCGCGGGtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggccta < 3:298138‑M1/132‑125 (MQ=255) tgcgcgggtcaacccgctcctacaagatcccgataaccctggcaggagcgggtccccccgcgaataggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctacaaaccctcccccgc < 3:48158‑M1/145‑140 (MQ=255) cgcgGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTAt < 4:39067/148‑1 (MQ=255) gcgGGtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctacaaaccctc > 5:287156‑M1/1‑5 (MQ=255) gcgGGtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctacaaaccctc < 6:287156‑M1/138‑134 (MQ=255) gcgGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGtt > 8:249937/1‑114 (MQ=255) gggtgaacccgctcctacaagataccgataaccctggcaggagcgggttcccccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtacccccatggcctacaaccccacgccccccccccac > 4:314985‑M1/1‑3 (MQ=255) gggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGc > 5:32605/1‑114 (MQ=255) gggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGc < 6:32605/114‑1 (MQ=255) gggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTa > 6:52837/1‑148 (MQ=255) ggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtaccc < 2:74619‑M2/116‑67 (MQ=255) ggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtaccc < 2:69674‑M2/116‑67 (MQ=255) ggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtaccc > 1:74619‑M2/1‑50 (MQ=255) ggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtaccc > 1:69674‑M2/1‑50 (MQ=255) gggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcccgcgtacccccctggcctacaaacccgcccccgccccgcccc < 6:242871‑M2/148‑100 (MQ=255) | TGGTTCAGCAGCAGGCGCAGCGGGCGCACCTGGCGCAGCAGGGCGGAAGGTGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAGCCAAAGACAAGACTGGTTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAA > NC_002947/1531622‑1531916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |