New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1531769	21 (0.390)	5 (0.110)	3/212	NT	15.8%	coding (107/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	= 1531817	36 (0.820)					coding (59/630 nt)	PP_1344	hypothetical protein

TGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGAAATCCACCA  >  NC_002947/1531672‑1531962                                                                                                                                                    |                                                                                                                                                    gtggggggggggcgtgGGGTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAccc                                                                                                                                                  >  4:314985‑M2/6‑146 (MQ=255)        gCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTATTCGCGGGGGGACCCGCTCCTGCCAGGGTTATCGGGATCTTGTAGGA‑GCGGGTTGAcccgcgca                                                                                                                                             <  3:48158‑M2/147‑9 (MQ=255)            gggAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGTGCTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaagcggc                                                                                                                                        <  1:258900‑M2/149‑14 (MQ=255)             ggAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCGGCCAGGGGTATCGGTAGCTTGTAGGA‑GCGGGTTGAcccgcgaagaggccg                                                                                                                                      <  1:185618‑M2/149‑16 (MQ=255)              gAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgc                                                                                                                                                <  6:287156‑M2/138‑6 (MQ=255)              gAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgc                                                                                                                                                >  5:287156‑M2/1‑133 (MQ=255)                       tAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaa                                                                                                                                             >  4:298138‑M2/1‑124 (MQ=255)                       tAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaa                                                                                                                                             <  3:298138‑M2/132‑9 (MQ=255)                        aGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCGGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGc                                                                                                                          >  4:295552/1‑149 (MQ=255)                                              gTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGa                                                                                                   >  3:247354/1‑149 (MQ=255)                                                            gT‑CTAACATCTCCGTAGCCTGTGCGGGCCTCTTCGCGGGGTAACCGGCTCCTGCCAGGGTTATGGGTATCTTGTAGGA‑GCGGGTTCACCCGCTAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTg                                                                                     <  5:247080/149‑1 (MQ=38)                                                                        ccGTTGCCTGTGCCGGCCTCATACCGGGGGTAACCGCACCAGCCAGCGTTTTAGGGATATTGTTTGA‑GCGGGTTGACCCCCGCAAACGCC‑CGCCCAGGCAGCCAAAGACCAGAATGG‑GTCTAGATACCTTTAATGTTGGCaaccagtt                                                                           >  4:312628/1‑142 (MQ=255)                                                                         cGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATAGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGa                                                                          >  2:43876/1‑148 (MQ=255)                                                                               cTGTGCCGGCCTCTTACCGGGGGAAACCCCTCCGGGCAGGGGTTTAGGTATCTTGTAGGA‑GCCGGTTGACCCGCGCAGAGGCC‑GGCACAGGCAGCCCAAGACAAGACTGG‑TTAACGATAGCTTTGATTTTGCCAAGCCTTTAACTCAGt                                                                   >  4:299050/1‑149 (MQ=255)                                                                                 gtgCCGGCCTCTTAGCGGGGGAACCCCCTCCTGCCAGGGTTATCGGTATCTTGTAAGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAAACAAAAAAGG‑TTCTAGATAGCTTTAATGTTTCCAATCCATTAACTAAGTg                                                                  >  8:225360/1‑148 (MQ=25)                                                                                      ggCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTTTCGGTATCTTGTAGGA‑GCGGGATCACCCGCGAAGCGGCC‑GGCACAGGCAGCCAAACACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCACTGAAAATg                                                            >  6:208327/1‑149 (MQ=255)                                                                                         ctctTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGAGGGGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGcc                                                          >  1:86027/1‑149 (MQ=255)                                                                                         ctctTCGCGGGGGAACCCGCTCCTGCCAGGGGTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGccc                                                         >  3:39067/1‑149 (MQ=255)                                                                                              cgcgGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTAt                                                     <  4:39067/148‑1 (MQ=255)                                                                                               gcgGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGtt                                                                                      >  8:249937/1‑114 (MQ=255)                                                                                                 gggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGc                                                                                    <  6:32605/114‑1 (MQ=255)                                                                                                 gggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGc                                                                                    >  5:32605/1‑114 (MQ=255)                                                                                                 gggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTa                                                  >  6:52837/1‑148 (MQ=255)                                                                                                  ggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtaccc                                                                                   <  2:74619‑M2/116‑67 (MQ=255)                                                                                                  ggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtaccc                                                                                   >  1:69674‑M2/1‑50 (MQ=255)                                                                                                  ggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtaccc                                                                                   >  1:74619‑M2/1‑50 (MQ=255)                                                                                                  ggggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcacgcgtaccc                                                                                   <  2:69674‑M2/116‑67 (MQ=255)                                                                                                   gggAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCAcccgcgaagaggccggcacaggcaacggagatgttagactgtgcccacgtcacttcccgcgtacccccctggcctacaaacccgcccccgccccgcccc                                                  <  6:242871‑M2/148‑100 (MQ=255)                                                                                                       aCCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAgg                                           <  5:52837/149‑1 (MQ=255)                                                                                                        cccGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGc                                          >  8:108881/1‑149 (MQ=255)                                                                                                        cccGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGc                                          >  1:87309/1‑149 (MQ=255)                                                                                                           gCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGcccc                                       >  6:150046/1‑149 (MQ=255)                                                                                                                  ccAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCCGGGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCACATGCCa                                  >  1:85874/1‑148 (MQ=255)                                                                                                                      ggTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGc                            <  5:150046/149‑1 (MQ=255)                                                                                                                       gTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCt                           >  8:13622/1‑149 (MQ=255)                                                                                                                           tCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACg                             <  6:279588/143‑1 (MQ=255)                                                                                                                           tCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACg                             >  5:279588/1‑143 (MQ=255)                                                                                                                             gtaaTCTTTTAGTC‑GCGGGTCCACCCGCGAAGTGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCa                     <  3:312628/146‑1 (MQ=255)                                                                                                                             ggTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCa                     <  2:87309/149‑1 (MQ=255)                                                                                                                             ggTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGACAAAACGCTGTATCa                     <  7:225360/149‑1 (MQ=255)                                                                                                                             ggTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCAAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCa                     <  2:85874/149‑1 (MQ=255)                                                                                                                                 tCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCAt                 >  1:87419/1‑149 (MQ=255)                                                                                                                                   ttGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGGTTTGAAGATAGCTTTAATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGGCAAAAAGCTGTATCAGCATc                >  1:99009/1‑149 (MQ=38)                                                                                                                                     gTAGGA‑GCGGGTTCACCCGCGAAGCGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTg             >  6:250594/1‑149 (MQ=255)                                                                                                                                      tAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTg             <  7:13622/148‑1 (MQ=255)                                                                                                                                      tAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTg             >  4:288419/1‑148 (MQ=255)                                                                                                                                         gA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGaaa         <  4:247354/149‑1 (MQ=255)                                                                                                                                            gCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGAAAt        >  2:214041/1‑148 (MQ=255)                                                                                                                                             cGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGAAATcc      <  8:72390/149‑1 (MQ=255)                                                                                                                                               ggTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGAAATccac    >  7:202417/1‑149 (MQ=255)                                                                                                                                                gTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGAAATccac    >  7:122700/1‑148 (MQ=255)                                                                                                                                                gTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGAAATccac    <  8:122700/148‑1 (MQ=255)                                                                                                                                                 ttCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGAAATccacca  <  1:43876/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TGGCTGGGCGGGGGAGGGTTTGTAGGCCATGGGGGTACGCGTGAAGTGACGTGGGCACAGT‑CTAACATCTCCGTTGCCTGTGCCGGCCTCTTCGCGGGGGAACCCGCTCCTGCCAGGGTTATCGGTATCTTGTAGGA‑GCGGGTTCACCCGCGAAGAGGCC‑GGCACAGGCAGCCAAAGACAAGACTGG‑TTCTCGATAGCTTTCATGTTGCCAAGCCTTGAACTCAGTGAAAATGCCCCTATCTAAAACAGGCCCCTGCCAAAACGCTGTATCAGCATCGTGGAAATCCACCA  >  NC_002947/1531672‑1531962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.