New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1727994	44 (0.810)	3 (0.060)	3/252	NT	6.3%	coding (170/2487 nt)	plsB	glycerol‑3‑phosphate acyltransferase
	?	NC_002947	= 1728053	47 (0.900)					coding (111/2487 nt)	plsB	glycerol‑3‑phosphate acyltransferase

CGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCG  >  NC_002947/1727849‑1728142                                                                                                                                                  |                                                                                                                                                     cGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGc                                                                                                                                                    <  1:329281/148‑1 (MQ=255) cGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCa                                                                                                                                                   >  6:149341/1‑149 (MQ=255)  gTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCAc                                                                                                                                                  <  3:143267/149‑1 (MQ=255)      gcggggcgCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGcc                                                                                                                                              <  5:149341/149‑1 (MQ=255)      gcggggcgCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGcc                                                                                                                                              <  1:257869/149‑1 (MQ=255)       cggggcgCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGc                                                                                                                                               >  2:114459/1‑147 (MQ=255)            cgccgcTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCg                                                                                                                                        <  1:315034/149‑1 (MQ=255)             gccgcTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTTGTGCACTCGTGGTCGAGCACGGCCAGGTCgg                                                                                                                                       <  1:206916/149‑1 (MQ=255)              ccgcATTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGt                                                                                                                                      >  7:141555/1‑149 (MQ=255)                gcTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGa                                                                                                                                    <  6:274644/149‑1 (MQ=255)                        ccTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGc                                                                                                                            >  1:113095/1‑149 (MQ=255)                              ggcCGAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAggg                                                                                                                       >  3:335663/1‑148 (MQ=255)                                  gAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACg                                                                                                                  >  1:83625/1‑149 (MQ=255)                                         tCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGaa                                                                                                           <  8:175021/149‑1 (MQ=255)                                         tCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGaa                                                                                                           <  3:144111/149‑1 (MQ=255)                                           cGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAac                                                                                                          <  1:114459/148‑1 (MQ=255)                                            gggTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAacac                                                                                                        <  6:138462/149‑1 (MQ=255)                                                 gggggTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCCTAGAACAccggcc                                                                                                   >  4:213634/1‑149 (MQ=255)                                                  ggggTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACAccggccg                                                                                                  >  4:243591/1‑149 (MQ=255)                                                          gTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCTGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAgg                                                                                                                        <  4:261242/119‑1 (MQ=255)                                                          gTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCTGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAgg                                                                                                                        >  3:261242/1‑119 (MQ=255)                                                          gTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGt                                                                                          <  5:170635‑M2/149‑2 (MQ=255)                                                               agaaCGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAccgcagccggccggtgttctatgcgttgccctcgcccgcgctcaccgacctggccgtgctcgacc                                                                                     <  4:85139‑M1/149‑66 (MQ=255)                                                                   cgcgGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGa                                                                                 <  2:113095/149‑1 (MQ=255)                                                                    gcggcgGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAg                                                                                <  7:173868/149‑1 (MQ=255)                                                                     cggcggGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAgg                                                                               <  1:105079/149‑1 (MQ=255)                                                                       gcggGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGt                                                                             >  5:5959/1‑149 (MQ=255)                                                                                tGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAgg                                                                               <  7:115042/138‑1 (MQ=255)                                                                                tGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAgg                                                                               >  8:115042/1‑138 (MQ=255)                                                                                tGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGa                                                                    >  3:243682/1‑149 (MQ=255)                                                                                    gTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTgg                                                                <  6:5959/149‑1 (MQ=255)                                                                                         ccGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAccgcagccggccggtgttctatgcgttgccctcgcccgcgctcaccgacctggccgtgctcgaccac                                                                                   >  2:119728‑M1/1‑58 (MQ=255)                                                                                         ccGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAccgcagccggccggtgttctatgcgttgccctcgcccgcgctcaccgacctggccgtgctcgaccac                                                                                   <  1:119728‑M1/125‑68 (MQ=255)                                                                                         ccGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGAt                                                           >  1:234160/1‑149 (MQ=255)                                                                                               gCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGGCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGtctc                                                     <  8:141555/149‑1 (MQ=255)                                                                                                cTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCg                                                    <  3:243591/149‑1 (MQ=255)                                                                                                cTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCg                                                    >  6:233800/1‑149 (MQ=255)                                                                                                   ccGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGa                                                  <  3:213634/148‑1 (MQ=255)                                                                                                              gggCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAg                                      >  4:25/1‑149 (MQ=255)                                                                                                                    ggCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTacaa                                <  5:233800/149‑1 (MQ=255)                                                                                                                     gCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTacaa                                >  6:92149/1‑148 (MQ=255)                                                                                                                        gCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAgg                            <  2:234160/149‑1 (MQ=255)                                                                                                                         ccccGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAgc                                                <  4:282160/128‑1 (MQ=255)                                                                                                                         ccccGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAgc                                                >  3:282160/1‑128 (MQ=255)                                                                                                                              ccTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGc                      <  6:170635/149‑1 (MQ=255)                                                                                                                                     gCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATgg                                                                        >  5:328818/1‑92 (MQ=255)                                                                                                                                     gCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATgg                                                                        <  6:328818/92‑1 (MQ=255)                                                                                                                                       aCTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGgccgcc              >  2:225163/1‑148 (MQ=255)                                                                                                                                        cTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGa            <  2:83625/149‑1 (MQ=255)                                                                                                                                          cGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGaa           >  5:11498/1‑148 (MQ=255)                                                                                                                                           gTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGtcgaccacgagtgcaccaaggcggggctgccgcgcccggtgctgccggtagccgtcgg                                 >  2:119728‑M2/1‑67 (MQ=255)                                                                                                                                           gTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGtcgaccacgagtgcaccaaggcggggctgccgcgcccggtgctgccggtagccgtcgg                                 <  1:119728‑M2/125‑59 (MQ=255)                                                                                                                                             ggTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGtcgaccacgagtgcaccaaggcggggctgccgcgcccggtgctgccggtagccgtcggcccactgcaggaacccgccgcgttct       <  4:85139‑M2/149‑85 (MQ=255)                                                                                                                                             ggTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATc       <  3:25/149‑1 (MQ=255)                                                                                                                                                cGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCa      >  1:181873/1‑147 (MQ=255)                                                                                                                                                cGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCa      <  2:181873/147‑1 (MQ=255)                                                                                                                                                  accgcagccggccggtgttctatgcgttgccctcgcccgcgctcaccgacctggccgtgctcgaccacgagtgcaccaaggcggggctgccgcgcccggtgctgccggtagccgtcggcccactgcaggaacccgccgcgttcttctac  <  5:170635‑M1/149‑149 (MQ=255)                                                                                                                                                  aGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCg                                                    <  4:334340/99‑1 (MQ=255)                                                                                                                                                  aGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCg                                                    >  3:334340/1‑99 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CGTGGGCGGGGCGCCGCTTTTGTCCTGGCGGCCGAGCCAGTCCGGGTCGGGGGTCAGGTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCG  >  NC_002947/1727849‑1728142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.