New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1727994	44 (0.810)	3 (0.060)	3/252	NT	6.3%	coding (170/2487 nt)	plsB	glycerol‑3‑phosphate acyltransferase
	?	NC_002947	= 1728053	47 (0.900)					coding (111/2487 nt)	plsB	glycerol‑3‑phosphate acyltransferase

GTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATGGGGTGTGTGCCCTGGGTGTGATTTTCAGGTGAGTA  >  NC_002947/1727906‑1728199                                                                                                                                                    |                                                                                                                                                   gTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGt                                                                                                                                                   <  5:170635‑M2/149‑2 (MQ=255)          cgcgGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGa                                                                                                                                          <  2:113095/149‑1 (MQ=255)           gcggcgGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAg                                                                                                                                         <  7:173868/149‑1 (MQ=255)            cggcggGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAgg                                                                                                                                        <  1:105079/149‑1 (MQ=255)              gcggGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGt                                                                                                                                      >  5:5959/1‑149 (MQ=255)                       tGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAgg                                                                                                                                        <  7:115042/138‑1 (MQ=255)                       tGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAgg                                                                                                                                        >  8:115042/1‑138 (MQ=255)                       tGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGa                                                                                                                             >  3:243682/1‑149 (MQ=255)                           gTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTgg                                                                                                                         <  6:5959/149‑1 (MQ=255)                                ccGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGAt                                                                                                                    >  1:234160/1‑149 (MQ=255)                                      gCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGGCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGtctc                                                                                                              <  8:141555/149‑1 (MQ=255)                                       cTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCg                                                                                                             >  6:233800/1‑149 (MQ=255)                                       cTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCg                                                                                                             <  3:243591/149‑1 (MQ=255)                                          ccGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGa                                                                                                           <  3:213634/148‑1 (MQ=255)                                                     gggCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAg                                                                                               >  4:25/1‑149 (MQ=255)                                                           ggCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTacaa                                                                                         <  5:233800/149‑1 (MQ=255)                                                            gCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTacaa                                                                                         >  6:92149/1‑148 (MQ=255)                                                               gCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAgg                                                                                     <  2:234160/149‑1 (MQ=255)                                                                ccccGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAgc                                                                                                         >  3:282160/1‑128 (MQ=255)                                                                ccccGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAgc                                                                                                         <  4:282160/128‑1 (MQ=255)                                                                     ccTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGc                                                                               <  6:170635/149‑1 (MQ=255)                                                                            gCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATgg                                                                                                                                 >  5:328818/1‑92 (MQ=255)                                                                            gCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATgg                                                                                                                                 <  6:328818/92‑1 (MQ=255)                                                                              aCTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGgccgcc                                                                       >  2:225163/1‑148 (MQ=255)                                                                               cTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGa                                                                     <  2:83625/149‑1 (MQ=255)                                                                                 cGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGaa                                                                    >  5:11498/1‑148 (MQ=255)                                                                                  gTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGtcgaccacgagtgcaccaaggcggggctgccgcgcccggtgctgccggtagccgtcgg                                                                                          <  1:119728‑M2/125‑59 (MQ=255)                                                                                  gTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGtcgaccacgagtgcaccaaggcggggctgccgcgcccggtgctgccggtagccgtcgg                                                                                          >  2:119728‑M2/1‑67 (MQ=255)                                                                                    ggTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGtcgaccacgagtgcaccaaggcggggctgccgcgcccggtgctgccggtagccgtcggcccactgcaggaacccgccgcgttct                                                                <  4:85139‑M2/149‑85 (MQ=255)                                                                                    ggTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATc                                                                <  3:25/149‑1 (MQ=255)                                                                                       cGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCa                                                               >  1:181873/1‑147 (MQ=255)                                                                                       cGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCa                                                               <  2:181873/147‑1 (MQ=255)                                                                                         aGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCg                                                                                                             >  3:334340/1‑99 (MQ=255)                                                                                         aGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCg                                                                                                             <  4:334340/99‑1 (MQ=255)                                                                                              ggCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCa                                                      <  5:92149/149‑1 (MQ=255)                                                                                               gCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAg                                                     >  7:234590/1‑149 (MQ=255)                                                                                                ccAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAgg                                                    <  1:225163/149‑1 (MQ=255)                                                                                                ccAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAgg                                                    >  1:320092/1‑149 (MQ=255)                                                                                                  aGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAgggg                                                  <  4:335663/149‑1 (MQ=255)                                                                                                    gTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAgggggg                                                <  6:11498/149‑1 (MQ=255)                                                                                                                         cAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATGGGgt                                 >  6:270437/1‑143 (MQ=255)                                                                                                                         cAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATGGGgt                                 <  5:270437/143‑1 (MQ=255)                                                                                                                         cAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATGGGGTGTGTGc                           >  2:123875/1‑149 (MQ=255)                                                                                                                          aaCGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATGGGGTGTGTGcc                          >  1:222088/1‑149 (MQ=255)                                                                                                                          aaCGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTAGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCCGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATGGGGTGTGTGcc                          >  5:342123/1‑149 (MQ=255)                                                                                                                             gCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATGGGGTGTGTGCCCTg                       >  2:132870/1‑149 (MQ=255)                                                                                                                              cATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATGGGGTGTGTGCCCTgg                      <  2:320092/149‑1 (MQ=255)                                                                                                                               aTAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATGGGGTGTGTGCCCTggg                     >  2:96534/1‑149 (MQ=255)                                                                                                                                 aGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATGGGGTGTGTGCCCTggg                     >  2:311766/1‑147 (MQ=255)                                                                                                                                 aGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATGGGGTGTGTGCCCTggg                     <  1:311766/147‑1 (MQ=255)                                                                                                                                             ggcTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATGGGGTGTGTGCCCTGGGTGTGATTTTCAGGt       <  1:123875/149‑1 (MQ=255)                                                                                                                                                  ctgTCGAGGTTGAGGGTCATGGAAGACTGGGTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATTGGGTGTGTGCCCTGGGTGTGATTTTCAGGTGAGt   <  6:342123/146‑1 (MQ=255)                                                                                                                                                  cGGTCGAGGTTGAGGGTCATGGAAGAGTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATGGGGTGTGTGCCCTGGGTGTGATTTTCAGGTGAGTa  <  4:243682/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GTAGAAGAACGCGGCGGGTTCCTGCAGTGGGCCGACGGCTACCGGCAGCACCGGGCGCGGCAGCCCCGCCTTGGTGCACTCGTGGTCGAGCACGGCCAGGTCGGTGAGCGCGGGCGAGGGCAACGCATAGAACACCGGCCGGCTGCGGTCGAGGTTGAGGGTCATGGAAGACTGGTTGATGGTCTCGGAGCGCACCCACAGGTACAACAGGCGACGCAGGCCGCCGAATATCAGGCGGTGCAGGGGGGAACGGGTCATGGGGTGTGTGCCCTGGGTGTGATTTTCAGGTGAGTA  >  NC_002947/1727906‑1728199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.