New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1798399 =	38 (0.700)	3 (0.060)	3/242	NT	7.5%	coding (322/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
	?	NC_002947	1798455 =	39 (0.780)					coding (378/1128 nt)	lpxB	lipid‑A‑disaccharide synthase

CGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACG  >  NC_002947/1798251‑1798531                                                                                                                                                     |                                                                                                                                     gcggtcggcttcaagcggtatggtgtctgccagcggatggccgacaaaacgcactggcacaccctgctcttcgtagaaccgcgcctcgaacggcagcagcgtcagcatcaggtcgcagccttcgcggatcttcagcacgcgcttctgcc                                                                                                                                      >  8:281395‑M1/149‑149 (MQ=255)   tCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTgcgc                                                                                                                                    <  2:9334/149‑1 (MQ=255)       ggcttcaagcggtatggtgtctgccagcgggtggccgacaaaacgcactggcacaccctgctcttcgtagaaccgcgcctcgaacggcagcagcgtcagcatcaggtcgcagccttcgcggatcttcagcacgcgcttctgcCGCCAg                                                                                                                                 >  4:305033‑M1/143‑148 (MQ=255)        gggCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGc                                                                                                                               <  8:12203/149‑1 (MQ=255)        gcttcaagcggtatggtgtctgccagcgggtggccgacaaaacgcactggcacaccctgctcttcgtagaaccgcgcctcgaacggcagcagcgtcagcatcaggtcgcagccttcgcggatcttcagcacgcgcttctgcCGCCAGGc                                                                                                                               >  7:139806‑M1/142‑149 (MQ=255)         ggCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGcc                                                                                                                              <  4:211513/149‑1 (MQ=255)          ttcaagcggtatggtgtctgccagcgggtggccgacaaaacgcactggcacaccctgctcttcgtagaaccgcgcctcgaacggcagcagcgtcagcatcaggtcgcagccttcgcggatcttcagcacgcgcttctgcCGCCAGGcc                                                                                                                              <  6:267230‑M1/9‑1 (MQ=255)          gCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCg                                                                                                                             >  3:49160/1‑149 (MQ=255)             aGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGa                                                                                                                          >  4:138558/1‑149 (MQ=255)                agAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATc                                                                                                                        >  6:174407/2‑148 (MQ=255)                              gcCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTAt                                                                                                         >  8:264017/1‑149 (MQ=255)                                cTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGt                                                                                                       <  5:309424/149‑1 (MQ=255)                                    gcgAACTGCTCAAGCGGCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGc                                                                                                   <  2:143542/149‑1 (MQ=255)                                    gcgAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGc                                                                                                   <  3:124799/149‑1 (MQ=255)                                    gcgAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGc                                                                                                   <  3:138558/149‑1 (MQ=255)                                    gcgAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTAATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGc                                                                                                   <  2:37605/149‑1 (MQ=255)                                     gtggccgacaaaacgcactggcacaccctgctcttcgtagaaccgcgcctcgaacggcagcagcgtcagcatcaggtcgcagccttcgcggatcttcagcacgcgcttctgcCGCCAGGc                                                                                                                               <  1:128972‑M1/8‑1 (MQ=255)                                     gtggccgacaaaacgcactggcacaccctgctcttcgtagaaccgcgcctcgaacggcagcagcgtcagcatcaggtcgcagccttcgcggatcttcagcacgcgcttctgcCGCCAGGc                                                                                                                               >  2:128972‑M1/113‑120 (MQ=255)                                       aaCTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCg                                                                                                >  6:86889/1‑149 (MQ=255)                                         ccgacaaaacgcactggcacaccctgctcttcgtagaaccgcgcctcgaacggcagcagcgtcagcatcaggtcgcagccttcgcggatcttcagcacgcgcttctgcCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGt                                                                                               <  5:84426‑M1/40‑1 (MQ=255)                                               aaGCGCCGCAAGCTGATGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGCCGCCCCTGACTTCACCGACAACAACGAGCTCAAGCTGCGCCAGGCCGGGAGCAAGACCGTGCACTATGTCAGCACGTCTGggtg                                                                                        >  2:280941/1‑149 (MQ=255)                                                    ccgcAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCAGTCAGTGTGGGCCt                                                                                   >  5:227834/1‑149 (MQ=255)                                                         gcacaccctgctcttcgtagaaccgcgcctcgaacggcagcagcgtcagcatcaggtcgcagccttcgcggatcttcagcacgcgcttctgcCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTggcgg                                                                              >  6:84426‑M1/93‑149 (MQ=255)                                                          gcggctcATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCTGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTCCACTATGTCAGCCCGTCAGTGTGGGCCTggcggc                                                                             <  4:65457/146‑1 (MQ=255)                                                          cacaccctgctcttcgtagaaccgcgcctcgaacggcagcagcgtcagcatcaggtcgcagccttcgcggatcttcagcacgcgcttctgcCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTggcggc                                                                             >  5:120728‑M1/92‑149 (MQ=255)                                                            tgctgATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGa                                                                                                                          >  5:342331/1‑102 (MQ=255)                                                            tgctgATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGa                                                                                                                          <  6:342331/102‑1 (MQ=255)                                                                   ccAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGcgcg                                                                    >  2:54726/1‑149 (MQ=255)                                                                        cccTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTg                                                               <  5:174407/149‑1 (MQ=255)                                                                         ccTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGc                                                                 >  1:41680/1‑146 (MQ=255)                                                                         ccTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGc                                                                 <  2:41680/146‑1 (MQ=255)                                                                          cTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGaa                                                             <  4:271061/149‑1 (MQ=255)                                                                                     aaaGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGaa                                                   <  7:264017/148‑1 (MQ=255)                                                                                       aGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGc                                                <  1:302832/149‑1 (MQ=255)                                                                                                   tCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGAt                                     >  8:74626/1‑148 (MQ=255)                                                                                                   tCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGAt                                     <  7:74626/148‑1 (MQ=255)                                                                                                   tCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCAGCGAAGGCTGCGACCTGATg                                    >  5:267230/1‑149 (MQ=255)                                                                                                        ggCATCGACGCCCCTGACTTCACCCTCAACCTCGCGCTCAAGCTGCGCCAGGCCGGGCTCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGCAGCGCGTGCTGAAGATCCGCGAAGGCTGCGCCCTGATGCTGAc                               >  1:174962/1‑149 (MQ=255)                                                                                                         gCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGTGCCTGGCGGCAGAAGCGCGTGCTGAAGATCAGCGCAGGCTGCGACCGGCTGCTGACg                              >  8:123456/1‑149 (MQ=255)                                                                                                            tCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACgctg                           >  7:248531/1‑149 (MQ=255)                                                                                                                  ccccTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCg                     <  5:86889/149‑1 (MQ=255)                                                                                                                    ccTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGtt                   >  6:71518/1‑149 (MQ=255)                                                                                                                     cTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTc                  <  8:248531/149‑1 (MQ=255)                                                                                                                          ttCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGgc             >  5:247812/1‑149 (MQ=255)                                                                                                                          ttCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGgc             >  5:244931/1‑149 (MQ=255)                                                                                                                              cccTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCgg         <  4:49160/149‑1 (MQ=255)                                                                                                                                cTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGtt       <  5:71518/149‑1 (MQ=255)                                                                                                                                      aTCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGCCCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACg  >  3:280683/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                     CGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACG  >  NC_002947/1798251‑1798531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.