New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1798399 =	38 (0.700)	3 (0.060)	3/242	NT	7.5%	coding (322/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
	?	NC_002947	1798455 =	39 (0.780)					coding (378/1128 nt)	lpxB	lipid‑A‑disaccharide synthase

AGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGCCGACCGC  >  NC_002947/1798307‑1798602                                                                                                                                                     |                                                                                                                                                    gcacaccctgctcttcgtagaaccgcgcctcgaacggcagcagcgtcagcatcaggtcgcagccttcgcggatcttcagcacgcgcttctgcCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTggcgg                                                                                                                                                     >  6:84426‑M1/93‑149 (MQ=255)  gcggctcATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCTGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTCCACTATGTCAGCCCGTCAGTGTGGGCCTggcggc                                                                                                                                                    <  4:65457/146‑1 (MQ=255)  cacaccctgctcttcgtagaaccgcgcctcgaacggcagcagcgtcagcatcaggtcgcagccttcgcggatcttcagcacgcgcttctgcCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTggcggc                                                                                                                                                    >  5:120728‑M1/92‑149 (MQ=255)           ccAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGcgcg                                                                                                                                           >  2:54726/1‑149 (MQ=255)                cccTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTg                                                                                                                                      <  5:174407/149‑1 (MQ=255)                 ccTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGc                                                                                                                                        >  1:41680/1‑146 (MQ=255)                 ccTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGc                                                                                                                                        <  2:41680/146‑1 (MQ=255)                  cTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGaa                                                                                                                                    <  4:271061/149‑1 (MQ=255)                             aaaGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGaa                                                                                                                          <  7:264017/148‑1 (MQ=255)                               aGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGc                                                                                                                       <  1:302832/149‑1 (MQ=255)                                           tCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGAt                                                                                                            >  8:74626/1‑148 (MQ=255)                                           tCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGAt                                                                                                            <  7:74626/148‑1 (MQ=255)                                           tCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCAGCGAAGGCTGCGACCTGATg                                                                                                           >  5:267230/1‑149 (MQ=255)                                                ggCATCGACGCCCCTGACTTCACCCTCAACCTCGCGCTCAAGCTGCGCCAGGCCGGGCTCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGCAGCGCGTGCTGAAGATCCGCGAAGGCTGCGCCCTGATGCTGAc                                                                                                      >  1:174962/1‑149 (MQ=255)                                                 gCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGTGCCTGGCGGCAGAAGCGCGTGCTGAAGATCAGCGCAGGCTGCGACCGGCTGCTGACg                                                                                                     >  8:123456/1‑149 (MQ=255)                                                    tCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACgctg                                                                                                  >  7:248531/1‑149 (MQ=255)                                                          ccccTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCg                                                                                            <  5:86889/149‑1 (MQ=255)                                                            ccTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGtt                                                                                          >  6:71518/1‑149 (MQ=255)                                                             cTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTc                                                                                         <  8:248531/149‑1 (MQ=255)                                                                  ttCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGgc                                                                                    >  5:247812/1‑149 (MQ=255)                                                                  ttCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGgc                                                                                    >  5:244931/1‑149 (MQ=255)                                                                      cccTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCgg                                                                                <  4:49160/149‑1 (MQ=255)                                                                        cTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGtt                                                                              <  5:71518/149‑1 (MQ=255)                                                                              aTCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGCCCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACg                                                                         >  3:280683/1‑148 (MQ=255)                                                                                           gccgccaggcccacactgacgggctgacatagtgcacggtcttgatcccggcctggcgGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGtgtg                                                           >  5:120728‑M2/59‑149 (MQ=255)                                                                                            ccgccaggcccacactgacgggctgacatagtgcacggtcttgatcccggcctggcgGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGc                                                          >  6:84426‑M2/58‑149 (MQ=255)                                                                                               CCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAagag                                                                    <  1:121639‑M1/136‑1 (MQ=255)                                                                                               CCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAagag                                                                    >  2:121639‑M1/1‑136 (MQ=255)                                                                                                CAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGt                                                      >  6:247812‑M1/1‑149 (MQ=255)                                                                                                 AGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTg                                                     <  5:171997‑M1/149‑1 (MQ=255)                                                                                                   GCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCg                                                   <  2:27293‑M1/149‑1 (MQ=255)                                                                                                    CCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGt                                                  <  5:75112‑M1/149‑1 (MQ=255)                                                                                                      gcgATCAAGACAGTGCACAATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCGGAAGATCCGCGAAGGCTGCGCCCTGATGCTGACGCTGCTGCCCTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGttt                                                >  2:226677/3‑149 (MQ=255)                                                                                                        gATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGATGAAGATCCGCGAAGGGTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTg                                              <  7:123456/149‑1 (MQ=255)                                                                                                          tCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATg                                                                                                           >  8:140866/1‑86 (MQ=255)                                                                                                          tCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAagag                                                                    >  8:16092/1‑125 (MQ=255)                                                                                                          tCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAagag                                                                    <  7:16092/125‑1 (MQ=255)                                                                                                             acgggctgacatagtgcacggtcttgatcccggcctggcgGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCgg                                          <  5:84426‑M2/108‑1 (MQ=255)                                                                                                             aGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCa                                                                  <  4:51553/124‑1 (MQ=255)                                                                                                             aGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCa                                                                  >  3:51553/1‑124 (MQ=255)                                                                                                                      aCTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTg                                >  6:69287/1‑149 (MQ=255)                                                                                                                       cTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTgg                               <  6:244931/149‑1 (MQ=255)                                                                                                                       cTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTgg                               <  6:75112/149‑1 (MQ=255)                                                                                                                         aTGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTgg                               >  3:286341/1‑147 (MQ=255)                                                                                                                              aGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTTCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGacac                        >  6:29482/1‑149 (MQ=255)                                                                                                                              aGCCCGGCAGTGGGGGCCTGGCGGCAGAAGCGCGTGCTGACGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTTCGTTTTGTCGGCCACCCGCTGGCAGaca                         <  2:174962/148‑1 (MQ=255)                                                                                                                                cccGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCa                      >  2:18301/1‑149 (MQ=255)                                                                                                                                   gTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACgctgct                                                                                                <  1:170570/72‑1 (MQ=255)                                                                                                                                   gTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACgctgct                                                                                                >  2:170570/1‑72 (MQ=255)                                                                                                                                   gTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCa                                                                  >  4:193526/1‑102 (MQ=255)                                                                                                                                   gTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCa                                                                  <  3:193526/102‑1 (MQ=255)                                                                                                                                           gggCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGaa           <  3:143410/149‑1 (MQ=255)                                                                                                                                            ggcctggcgGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGaa           <  6:267230‑M2/139‑1 (MQ=255)                                                                                                                                             gcctggcgGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCAc                                      <  1:128972‑M2/112‑1 (MQ=255)                                                                                                                                             gcctggcgGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCAc                                      >  2:128972‑M2/9‑120 (MQ=255)                                                                                                                                             gcctggcgGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGc         >  7:139806‑M2/9‑149 (MQ=255)                                                                                                                                               ctggcgGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGcc        >  4:305033‑M2/7‑148 (MQ=255)                                                                                                                                                    gGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCATCCGCTGGCAGACACCATACCGCTTGAAGCCGACCGc  >  8:281395‑M2/2‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGACGTATTCATCGGCATCGACGCCCCTGACTTCACCCTCAACATCGAGCTCAAGCTGCGCCAGGCCGGGATCAAGACCGTGCACTATGTCAGCCCGTCAGTGTGGGCCTGGCGGCAGAAGCGCGTGCTGAAGATCCGCGAAGGCTGCGACCTGATGCTGACGCTGCTGCCGTTCGAGGCGCGGTTCTACGAAGAGCAGGGTGTGCCAGTGCGTTTTGTCGGCCACCCGCTGGCAGACACCATACCGCTTGAAGCCGACCGC  >  NC_002947/1798307‑1798602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.