New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2472345	38 (0.700)	3 (0.060)	3/246	NT	7.1%	coding (1751/1851 nt)	PP_2167	PhoD‑like phosphatase
	?	NC_002947	= 2472381	43 (0.840)					coding (1715/1851 nt)	PP_2167	PhoD‑like phosphatase

GCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAG  >  NC_002947/2472205‑2472491                                                                                                                                             |                                                                                                                                                   gcgAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCa                                                                                                                                            >  8:300228/1‑149 (MQ=255)                       tAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGc                                                                                                                        <  8:101145/147‑1 (MQ=255)                       tAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCt                                                                                                                      >  3:101053/1‑149 (MQ=255)                             ctctGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCtgt                                                                                                                <  2:240577/149‑1 (MQ=255)                                tGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCATCAACCCCGCCAGCATCCAGCTGGTACACACGCGCCGGTCGCCCCTGTTCATAAAAAAACACCTGTCCAAGACCGGCACCATTCCACAGCCGTTACACGGCCTTGATGTggc                                                                                                             <  7:299269‑M2/149‑4 (MQ=255)                                  aaTCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGTCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTgg                                                                                                              >  3:270909‑M2/1‑144 (MQ=255)                                  aaTCTCACTACGCCCGGGTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCTGCACCATTCCTCTGCCGTTCCCCCGCCTTGCTGTgg                                                                                                              >  2:331394‑M2/1‑144 (MQ=255)                                     ctcACTACGCCCGGTTTTTAAACGCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAACACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGc                                                                                                        <  3:229798/149‑1 (MQ=255)                                        aCTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCacagcaaggccggggaacggctgtggaatggtgccgggctgggacag                                                                                                     <  8:173754‑M1/149‑48 (MQ=255)                                        aCTACGCCCGGTTTTTAAACTCTGTAGAATCACCCCCGCCAGCATCCACCAGGTACACCCGCGCCGGCCGCCCCTGATCATCAAAAAACACCTTTCCCACCCCGGCACCATTACACAGCCGATCCCCGGCCATGCTGTGGCTGGGCGTa                                                                                                     >  2:119271/1‑149 (MQ=255)                                         cTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTAc                                                                                                    >  1:101041/1‑149 (MQ=255)                                               ccGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGca                                                                                              >  8:7442/1‑149 (MQ=255)                                               ccGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGca                                                                                              >  1:174500/1‑149 (MQ=255)                                               ccGGTTTTTAAACTCTGTAGCCTCACCACCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGca                                                                                              >  6:235395/1‑149 (MQ=255)                                                     tttAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTTGGCGTACGCGGcac                                                                                             <  1:27692/144‑1 (MQ=255)                                                     tttAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGcac                                                                                             >  2:27692/1‑144 (MQ=255)                                                       tAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCacagcaaggccggggaacggctgtggaatggtgccgggctgggac                                                                                                       <  1:50887‑M1/132‑46 (MQ=255)                                                       tAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCacagcaaggccggggaacggctgtggaatggtgccgggctgggac                                                                                                       >  2:50887‑M1/1‑87 (MQ=255)                                                           ctctGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGTCGCCCCTGTTCATCAAAAAACCCCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCAttt                                                                                  <  8:299269/149‑1 (MQ=255)                                                            cgctggttgtatgcaccgcgctcgccgctcaactggtttaccaagcgccgagaaatggaggtggtgccgcgtacgCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTggg                                                                                                         >  3:182214‑M1/76‑125 (MQ=255)                                                            cgctggttgtatgcaccgcgctcgccgctcaactggtttaccaagcgccgagaaatggaggtggtgccgcgtacgCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTggg                                                                                                         <  4:182214‑M1/50‑1 (MQ=255)                                                             ctGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTtct                                                                                <  7:300228/149‑1 (MQ=255)                                                                   ccTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGgcgc                                                                          >  3:259547/1‑149 (MQ=255)                                                                       aCCCCCTCCAGCATCCAGCTTGTAAACACGAGCAGGCCGCAGATGATAATCAAAAACCACCTGTCCCAGCCCGGCACCATTACACAGCCGTTCCCAGGCCTTTCTGTGGATTGGCGTAAGCGGAACCACCTAAATTTCTCGGAGATTgg                                                                      <  8:316845/149‑1 (MQ=255)                                                                         ccccGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGt                                                                     >  1:174058/1‑148 (MQ=255)                                                                               cAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTTGTAAACCAg                                                              >  1:119540/1‑149 (MQ=255)                                                                                 gCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGtt                                                            <  2:101041/149‑1 (MQ=255)                                                                                    tCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAg                                                         <  2:174058/149‑1 (MQ=255)                                                                                            gTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGa                                                   <  5:235395/147‑1 (MQ=255)                                                                                            gTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGAGGCACCACCTCCAATTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAgc                                                 >  5:102069/1‑149 (MQ=255)                                                                                               gtttaccaagcgccgagaaatggaggtggtgccgcgtacgCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGc                                                                                                        >  4:313957‑M1/41‑91 (MQ=255)                                                                                               gtttaccaagcgccgagaaatggaggtggtgccgcgtacgCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGc                                                                                                        <  3:313957‑M1/51‑1 (MQ=255)                                                                                                          gccgccCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAAc                                   <  7:7442/149‑1 (MQ=255)                                                                                                             gccCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAg                                <  4:259547/149‑1 (MQ=255)                                                                                                               cccTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCg                              >  5:60723/1‑149 (MQ=255)                                                                                                               cccTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCg                              >  8:123799/1‑149 (MQ=255)                                                                                                                   gTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGcaccac                                                                                          >  8:57218/1‑85 (MQ=255)                                                                                                                   gTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGcaccac                                                                                          <  7:57218/85‑1 (MQ=255)                                                                                                                    ttCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGtt                           <  6:60723/147‑1 (MQ=255)                                                                                                                    ttCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGtt                           <  2:119540/147‑1 (MQ=255)                                                                                                                       atcaAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGc                       <  2:174500/148‑1 (MQ=255)                                                                                                                        tcaAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTATCGGCGCTTGGTAAACCAGTTGAGCGGCGa                                                   >  5:252857/1‑119 (MQ=255)                                                                                                                        tcaAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACAACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGa                                                   <  6:252857/119‑1 (MQ=255)                                                                                                                         caAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGa                         >  5:49584/1‑144 (MQ=255)                                                                                                                         caAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGa                         <  6:49584/144‑1 (MQ=255)                                                                                                                          aaaaaaCACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGt                   >  5:41427/1‑149 (MQ=255)                                                                                                                            aaaaCACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTc                  >  7:168362/1‑148 (MQ=255)                                                                                                                                 acCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGca             >  1:277829/1‑148 (MQ=255)                                                                                                                                   cTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagt          <  8:173754‑M2/149‑103 (MQ=255)                                                                                                                                     gTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagttta                         >  2:50887‑M2/1‑45 (MQ=255)                                                                                                                                     gTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagttta                         <  1:50887‑M2/132‑88 (MQ=255)                                                                                                                                           gCCacatcaaggccgtgtaacggctgtggaatggtgccggtcttggacaggtgtttttttatgaacaggggcgaccggcgcgtgtgtaccagctggatgctggcggggttgatgctacagagtttaaaaaccgggcgtagtgagattca  <  7:299269‑M1/149‑147 (MQ=255)                                                                                                                                            ccacagcaaggcgggggaacggcagaggaatggtgcagggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaacccgggcgtagtgagatt    >  2:331394‑M1/1‑2 (MQ=255)                                                                                                                                            ccacagcaaggccggggaacggctgtggaatggtgccgggctgggacaggtgttttttgatgaacaggggcggacggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagatt    >  3:270909‑M1/1‑2 (MQ=255)                                                                                                                                             |                                                                                                                                                   GCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAG  >  NC_002947/2472205‑2472491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.