New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2472345	38 (0.700)	3 (0.060)	3/246	NT	7.1%	coding (1751/1851 nt)	PP_2167	PhoD‑like phosphatase
	?	NC_002947	= 2472381	43 (0.840)					coding (1715/1851 nt)	PP_2167	PhoD‑like phosphatase

CTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCGGGGGAACTCGTTCTTGATTCCGCTGCTGGT  >  NC_002947/2472233‑2472526                                                                                                                                                     |                                                                                                                                                  ctctGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCtgt                                                                                                                                                   <  2:240577/149‑1 (MQ=255)    tGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCATCAACCCCGCCAGCATCCAGCTGGTACACACGCGCCGGTCGCCCCTGTTCATAAAAAAACACCTGTCCAAGACCGGCACCATTCCACAGCCGTTACACGGCCTTGATGTggc                                                                                                                                                <  7:299269‑M2/149‑4 (MQ=255)      aaTCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGTCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTgg                                                                                                                                                 >  3:270909‑M2/1‑144 (MQ=255)      aaTCTCACTACGCCCGGGTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCTGCACCATTCCTCTGCCGTTCCCCCGCCTTGCTGTgg                                                                                                                                                 >  2:331394‑M2/1‑144 (MQ=255)         ctcACTACGCCCGGTTTTTAAACGCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAACACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGc                                                                                                                                           <  3:229798/149‑1 (MQ=255)            aCTACGCCCGGTTTTTAAACTCTGTAGAATCACCCCCGCCAGCATCCACCAGGTACACCCGCGCCGGCCGCCCCTGATCATCAAAAAACACCTTTCCCACCCCGGCACCATTACACAGCCGATCCCCGGCCATGCTGTGGCTGGGCGTa                                                                                                                                        >  2:119271/1‑149 (MQ=255)             cTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTAc                                                                                                                                       >  1:101041/1‑149 (MQ=255)                   ccGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGca                                                                                                                                 >  8:7442/1‑149 (MQ=255)                   ccGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGca                                                                                                                                 >  1:174500/1‑149 (MQ=255)                   ccGGTTTTTAAACTCTGTAGCCTCACCACCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGca                                                                                                                                 >  6:235395/1‑149 (MQ=255)                         tttAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTTGGCGTACGCGGcac                                                                                                                                <  1:27692/144‑1 (MQ=255)                         tttAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGcac                                                                                                                                >  2:27692/1‑144 (MQ=255)                               ctctGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGTCGCCCCTGTTCATCAAAAAACCCCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCAttt                                                                                                                     <  8:299269/149‑1 (MQ=255)                                cgctggttgtatgcaccgcgctcgccgctcaactggtttaccaagcgccgagaaatggaggtggtgccgcgtacgCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTggg                                                                                                                                            <  4:182214‑M1/50‑1 (MQ=255)                                cgctggttgtatgcaccgcgctcgccgctcaactggtttaccaagcgccgagaaatggaggtggtgccgcgtacgCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTggg                                                                                                                                            >  3:182214‑M1/76‑125 (MQ=255)                                 ctGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTtct                                                                                                                   <  7:300228/149‑1 (MQ=255)                                       ccTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGgcgc                                                                                                             >  3:259547/1‑149 (MQ=255)                                           aCCCCCTCCAGCATCCAGCTTGTAAACACGAGCAGGCCGCAGATGATAATCAAAAACCACCTGTCCCAGCCCGGCACCATTACACAGCCGTTCCCAGGCCTTTCTGTGGATTGGCGTAAGCGGAACCACCTAAATTTCTCGGAGATTgg                                                                                                         <  8:316845/149‑1 (MQ=255)                                             ccccGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGt                                                                                                        >  1:174058/1‑148 (MQ=255)                                                   cAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTTGTAAACCAg                                                                                                 >  1:119540/1‑149 (MQ=255)                                                     gCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGtt                                                                                               <  2:101041/149‑1 (MQ=255)                                                        tCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAg                                                                                            <  2:174058/149‑1 (MQ=255)                                                                gTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGa                                                                                      <  5:235395/147‑1 (MQ=255)                                                                gTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGAGGCACCACCTCCAATTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAgc                                                                                    >  5:102069/1‑149 (MQ=255)                                                                   gtttaccaagcgccgagaaatggaggtggtgccgcgtacgCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGc                                                                                                                                           <  3:313957‑M1/51‑1 (MQ=255)                                                                   gtttaccaagcgccgagaaatggaggtggtgccgcgtacgCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGc                                                                                                                                           >  4:313957‑M1/41‑91 (MQ=255)                                                                              gccgccCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAAc                                                                      <  7:7442/149‑1 (MQ=255)                                                                                 gccCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAg                                                                   <  4:259547/149‑1 (MQ=255)                                                                                   cccTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCg                                                                 >  5:60723/1‑149 (MQ=255)                                                                                   cccTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCg                                                                 >  8:123799/1‑149 (MQ=255)                                                                                       gTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGcaccac                                                                                                                             <  7:57218/85‑1 (MQ=255)                                                                                       gTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGcaccac                                                                                                                             >  8:57218/1‑85 (MQ=255)                                                                                        ttCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGtt                                                              <  6:60723/147‑1 (MQ=255)                                                                                        ttCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGtt                                                              <  2:119540/147‑1 (MQ=255)                                                                                           atcaAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGc                                                          <  2:174500/148‑1 (MQ=255)                                                                                            tcaAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTATCGGCGCTTGGTAAACCAGTTGAGCGGCGa                                                                                      >  5:252857/1‑119 (MQ=255)                                                                                            tcaAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACAACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGa                                                                                      <  6:252857/119‑1 (MQ=255)                                                                                             caAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGa                                                            >  5:49584/1‑144 (MQ=255)                                                                                             caAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGa                                                            <  6:49584/144‑1 (MQ=255)                                                                                              aaaaaaCACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGt                                                      >  5:41427/1‑149 (MQ=255)                                                                                                aaaaCACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTc                                                     >  7:168362/1‑148 (MQ=255)                                                                                                     acCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGca                                                >  1:277829/1‑148 (MQ=255)                                                                                                       cTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagt                                             <  8:173754‑M2/149‑103 (MQ=255)                                                                                                         gTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagttta                                                            <  1:50887‑M2/132‑88 (MQ=255)                                                                                                         gTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagttta                                                            >  2:50887‑M2/1‑45 (MQ=255)                                                                                                                  cGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGCCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAgcgc                                  >  3:158536/1‑149 (MQ=255)                                                                                                                     cACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCgg                               <  4:158536/149‑1 (MQ=255)                                                                                                                       ccATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCgggg                             <  8:168362/149‑1 (MQ=255)                                                                                                                             cacaGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCGGGGGAACTc                       <  2:277829/149‑1 (MQ=255)                                                                                                                              acaGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCGGGGGAACTCg                      >  6:278917/1‑149 (MQ=255)                                                                                                                                 gCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCGGGGGAACTCGTTc                   <  6:41427/149‑1 (MQ=255)                                                                                                                                    gTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCAt                                                                           >  7:125624/1‑90 (MQ=255)                                                                                                                                    gTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCAt                                                                           <  8:125624/90‑1 (MQ=255)                                                                                                                                        cccGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCGGGGGAACTCGTTCTTGATTc            >  7:107132/1‑149 (MQ=255)                                                                                                                                         ccGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATcc                                           <  6:324226/117‑1 (MQ=255)                                                                                                                                         ccGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATcc                                           >  5:324226/1‑117 (MQ=255)                                                                                                                                             ccTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCGGGGGAACTCGTTCTTGATTCCgctg       <  8:107132/149‑1 (MQ=255)                                                                                                                                                   tgtgGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCGGGGGAACTCGTTCTTGATTCCGCTGCTGGt  >  3:126360/1‑148 (MQ=255)                                                                                                                                                     tgGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCGGGGGAACACGTTCTTGATTCCGctgctg    >  2:198392/1‑144 (MQ=255)                                                                                                                                                     tgGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCGGGGGAACACGTTCTTGATTCCGctgctg    <  1:198392/144‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACATCCAGCAAGCGCCGGGGGAACTCGTTCTTGATTCCGCTGCTGGT  >  NC_002947/2472233‑2472526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.