| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2625928 = | 26 (0.480) | 3 (0.060) | 3/244 | NT | 11.2% | intergenic (+106/‑194) | PP_2297/PP_t40 | integrase/tRNA‑His |
| ? | NC_002947 | 2625963 = | 23 (0.450) | intergenic (+141/‑159) | PP_2297/PP_t40 | integrase/tRNA‑His | |||||
GCGCGACACGTTCTTCAACTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTT > NC_002947/2625780‑2626074 | gcgcGACACGTTCTTCAACTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACtt < 5:60544/149‑1 (MQ=255) ttgcggtacaaccttacagaagcatggtgcggacgaagtgactcgaactcttacagcttgcgccgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTg < 3:194870‑M1/2‑1 (MQ=255) cgACACGTTCTTCAACTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTgg > 2:132350/1‑148 (MQ=255) gTTCTTCAACTATGGTGAGGCTACAAAGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACg > 8:103535/1‑148 (MQ=255) ttacagaagcatggtgcggacgaagagactcgaactcttacagcttgcgccgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTGGGACACGAAtt < 7:32512‑M1/13‑1 (MQ=255) cAACTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTa < 7:103535/148‑1 (MQ=255) gaagcatggtgcggacgaagagactcgaactcttacagcttgcgccgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggt < 1:14325‑M1/1‑1 (MQ=255) gaagcatggtgcggacgaagagactcgaactcttacagcttgcgccgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggt > 2:14325‑M1/130‑130 (MQ=255) cGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCAc > 6:7679/1‑149 (MQ=255) gCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCt < 1:132350/149‑1 (MQ=255) agagactcgaactcttacagcttgcgccgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCt > 8:32512‑M1/112‑149 (MQ=255) cTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCtgt < 4:231354/149‑1 (MQ=255) tcttacagcttgcgccgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggt > 7:161063‑M1/100‑100 (MQ=255) tcttacagcttgcgccgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggt < 8:161063‑M1/1‑1 (MQ=255) acaTTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATg‑cgc > 5:138401/1‑149 (MQ=255) tGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAgt < 3:219802/117‑1 (MQ=255) tGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAgt > 4:219802/1‑117 (MQ=255) aTTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGccc < 6:240617/148‑1 (MQ=255) aTTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGcc < 1:257708/147‑1 (MQ=255) cgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCtg < 6:294456‑M1/39‑1 (MQ=255) cgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCtg > 5:294456‑M1/85‑123 (MQ=255) tCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACCCCGGGCCACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTa > 5:278973/1‑148 (MQ=255) gggCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAg < 5:7679/149‑1 (MQ=255) gggCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAg < 1:100331/149‑1 (MQ=255) cAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGAGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGt > 2:107249/1‑149 (MQ=255) agagTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGtt > 2:28980/1‑149 (MQ=255) ccTGAGCGGCGACCGTGTGCCCACCCAAAACGTGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAAtt < 6:278973/149‑1 (MQ=255) tGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGa > 8:199372/1‑149 (MQ=255) gcggcgACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCa < 7:199372/149‑1 (MQ=255) gCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCAc > 5:178074/1‑147 (MQ=255) cccaAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGAttt < 6:178074/149‑1 (MQ=255) ccaAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCCCCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGAtt > 3:64909/1‑147 (MQ=255) caAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAg > 4:194870/1‑149 (MQ=255) aaaaCGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCCAATTGACCAAGCTCTGGCACCAGATTTAgg < 1:28980/149‑1 (MQ=255) gggACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAgcggc > 4:172222/1‑149 (MQ=255) gtgACACTTGTGACACGAATTTAGCGTTTCATAGTGAGTCCCACCTGTGTAAGATGCCTCTCCAAATCCTTATTATTCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTc < 1:107249/147‑1 (MQ=37) gggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGa < 3:172222/148‑1 (MQ=255) cTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCtt < 6:138401/149‑1 (MQ=255) | GCGCGACACGTTCTTCAACTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTT > NC_002947/2625780‑2626074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |