New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2625928 =	26 (0.480)	3 (0.060)	3/244	NT	11.2%	intergenic (+106/‑194)	PP_2297/PP_t40	integrase/tRNA‑His
	?	NC_002947	2625963 =	23 (0.450)					intergenic (+141/‑159)	PP_2297/PP_t40	integrase/tRNA‑His

CGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTGTAAGGTTGTACCGCAAGA  >  NC_002947/2625815‑2626111                                                                                                                                                     |                                                                                                                                                        cGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCAc                                                                                                                                                         >  6:7679/1‑149 (MQ=255)   gCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCt                                                                                                                                                       <  1:132350/149‑1 (MQ=255)   agagactcgaactcttacagcttgcgccgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCt                                                                                                                                                       >  8:32512‑M1/112‑149 (MQ=255)     cTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCtgt                                                                                                                                                     <  4:231354/149‑1 (MQ=255)                acaTTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATg‑cgc                                                                                                                                         >  5:138401/1‑149 (MQ=255)                          aTTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGccc                                                                                                                                <  6:240617/148‑1 (MQ=255)                          aTTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGcc                                                                                                                                 <  1:257708/147‑1 (MQ=255)                              cgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCtg                                                                                                                                                      >  5:294456‑M1/85‑123 (MQ=255)                              cgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCtg                                                                                                                                                      <  6:294456‑M1/39‑1 (MQ=255)                                   tCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACCCCGGGCCACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTa                                                                                                                     >  5:278973/1‑148 (MQ=255)                                     gggCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAg                                                                                                                  <  1:100331/149‑1 (MQ=255)                                     gggCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAg                                                                                                                  <  5:7679/149‑1 (MQ=255)                                        cAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGAGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGt                                                                                                               >  2:107249/1‑149 (MQ=255)                                         agagTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGtt                                                                                                              >  2:28980/1‑149 (MQ=255)                                                  ccTGAGCGGCGACCGTGTGCCCACCCAAAACGTGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAAtt                                                                                                     <  6:278973/149‑1 (MQ=255)                                                    tGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGa                                                                                                   >  8:199372/1‑149 (MQ=255)                                                       gcggcgACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCa                                                                                                <  7:199372/149‑1 (MQ=255)                                                                    gCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCAc                                                                                     >  5:178074/1‑147 (MQ=255)                                                                         cccaAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGAttt                                                                              <  6:178074/149‑1 (MQ=255)                                                                          ccaAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCCCCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGAtt                                                                               >  3:64909/1‑147 (MQ=255)                                                                           caAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAg                                                                            >  4:194870/1‑149 (MQ=255)                                                                            aaaaCGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCCAATTGACCAAGCTCTGGCACCAGATTTAgg                                                                           <  1:28980/149‑1 (MQ=255)                                                                                      gggACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAgcggc                                                                 >  4:172222/1‑149 (MQ=255)                                                                                                          gtgACACTTGTGACACGAATTTAGCGTTTCATAGTGAGTCCCACCTGTGTAAGATGCCTCTCCAAATCCTTATTATTCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTc                                                <  1:107249/147‑1 (MQ=37)                                                                                                          gggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGa                                              <  3:172222/148‑1 (MQ=255)                                                                                                              caggtgggacacactatgcaacgctaaattcgtgtcccaCCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAgcg                                                                   >  5:294456‑M2/40‑123 (MQ=255)                                                                                                              caggtgggacacactatgcaacgctaaattcgtgtcccaCCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAgcg                                                                   <  6:294456‑M2/84‑1 (MQ=255)                                                                                                               aggtgggacacactatgcaacgctaaattcgtgtcccaCCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTctct                                        >  8:32512‑M2/39‑149 (MQ=255)                                                                                                                cTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCtt                                       <  6:138401/149‑1 (MQ=255)                                                                                                                        ACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCa                               <  1:300039‑M1/149‑1 (MQ=255)                                                                                                                            aTTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCAt                           <  3:148404/149‑1 (MQ=255)                                                                                                                                  cGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCt                     >  8:14686/1‑149 (MQ=255)                                                                                                                                    ttGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTg                    >  6:123542/1‑148 (MQ=255)                                                                                                                                        aattcgtgtcccaCCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTGTaa                 <  7:32512‑M2/134‑1 (MQ=255)                                                                                                                                                   caCCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCACTTCGTCCGCACCATGCTTCTGTAAGGTTGTACCGCaa    <  3:194870‑M2/147‑1 (MQ=255)                                                                                                                                                    aCCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAaga                                                    >  7:161063‑M2/2‑100 (MQ=255)                                                                                                                                                    aCCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAaga                                                    <  8:161063‑M2/99‑1 (MQ=255)                                                                                                                                                    aCCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTc                      >  2:14325‑M2/2‑130 (MQ=255)                                                                                                                                                    aCCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTc                      <  1:14325‑M2/129‑1 (MQ=255)                                                                                                                                                     ccTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTGTAAGGTTGTACCGCAAGa  <  5:123542/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                        CGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATG‑CGCGCCAAGCCCTT‑GTA‑TCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTGTAAGGTTGTACCGCAAGA  >  NC_002947/2625815‑2626111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.