| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3642652 = | 31 (0.570) | 3 (0.060) | 3/244 | NT | 8.7% | coding (553/1431 nt) | PP_3209 | isoxanthopterin deaminase |
| ? | NC_002947 | 3642714 = | 34 (0.670) | coding (491/1431 nt) | PP_3209 | isoxanthopterin deaminase | |||||
GATGCCCAGCCGGCGCGCGGCGCGGGCGGTCTCGCGCAGGTGCTCGGGCGGCATGGAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGC > NC_002947/3642506‑3642798 | gtggagctggcccgctccggctgcagcacggtggccgaccatcattacctgtacttgccaggcatggccttcgacagcgcacagatcctcttcgaagaagccgagcgcctggggctgcgcttcatcctttgccggggcggcgcaacc < 6:269616‑M1/1‑1 (MQ=255) aTGCCCAGCCGGCGCGCGGCGCGGGCGGTCTCGCGCAGGTGCTCGGGCGGCATGGAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAg < 6:28594/149‑1 (MQ=255) gagctggcccgctccggctacagcacggtggccgaccatcattacctgtacttgccaggcatggccttcgacagcgcacagatcctcttcgaagaagccgagcgcctggggctgcgcttcatcctttgccggggcggcgcaacCCAGGt < 5:239541‑M1/6‑1 (MQ=255) gCCCAGCCGGCGCGCGGCGCGGGCGGTCTCGCGCAGGTGCTCGGGCGGCATGGAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAgg > 3:213986/1‑148 (MQ=255) gcggcgcggGCGGTCTCGCGCAGGTGCTCGGGCGGCATGGAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGt < 1:254624/149‑1 (MQ=255) cgcggGCGGTCTCGCGCAGGTGCTCGGGCGGCATGGAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑a < 6:170806/149‑1 (MQ=255) gcgcAGGTGCTCGGGCGGCATGGAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTcg > 4:265199/1‑149 (MQ=255) gcAGGTGCTCGGGCGGCATGGAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTcgcg > 2:18014/1‑149 (MQ=255) gaccatcattacctgtacttgccaggcatggccttcgacagcgcacagatcctcttcgaagaagccgagcgcctggggctgcgcttcatcctttgccggggcggcgcaacCCAGGt > 8:29927‑M1/111‑116 (MQ=255) gaccatcattacctgtacttgccaggcatggccttcgacagcgcacagatcctcttcgaagaagccgagcgcctggggctgcgcttcatcctttgccggggcggcgcaacCCAGGt < 7:29927‑M1/6‑1 (MQ=255) attacctgtacttgccaggcatggccttcgacagcgcacagatcctcttcgaagaagccgagcgcctggggctgcgcttcatcctttgccggggcggcgcaacCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTc < 4:307327‑M1/46‑1 (MQ=255) cGGGCGGCATGGAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTcc < 8:228818/149‑1 (MQ=255) gggCGGCATGGAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTcc < 8:147576/148‑1 (MQ=255) ggcggcATGGAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGc < 7:172556/149‑1 (MQ=255) gcggcATGGAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGcc < 3:36014/149‑1 (MQ=255) ctgtacttgccaggcatggccttcgacagcgcacagatcctcttcgaagaagccgagcgcctggggctgcgcttcatcctttgccggggcggcgcaaccc > 4:141451‑M1/99‑100 (MQ=255) ctgtacttgccaggcatggccttcgacagcgcacagatcctcttcgaagaagccgagcgcctggggctgcgcttcatcctttgccggggcggcgcaaccc < 3:141451‑M1/2‑1 (MQ=255) gcATGGAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGa < 1:18014/149‑1 (MQ=255) cATGGAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGAc > 5:220428/1‑149 (MQ=255) gAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTAc < 2:166307/149‑1 (MQ=255) gggCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTATTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTgg < 1:90770/148‑1 (MQ=255) ggcatggccttcgacagcgcacagatcctcttcgaagaagccgagcgcctggggctgcgcttcatcctttgccggggcggcgcaacCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTggg > 3:7392‑M1/87‑149 (MQ=255) tggccttcgacagcgcacagatcctcttcgaagaagccgagcgcctggggctgcgcttcatcctttgccggggcggcgcaacCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTgc > 3:307327‑M1/83‑149 (MQ=255) gcgcCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCgg < 3:278648/149‑1 (MQ=255) cATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCa > 1:23414/1‑147 (MQ=255) acGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAgg < 2:289693/142‑1 (MQ=255) acGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAgg > 1:289693/1‑142 (MQ=255) ggCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGCCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCa < 8:120228/149‑1 (MQ=255) cATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAgg > 5:155044/1‑149 (MQ=255) ggTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCg > 5:290256/1‑146 (MQ=255) ccTGTACCAAGCGCTGATCATCGTCCAGGTACTGCGTGTGGGTCTCCCTAGCCTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAaga < 1:284089/148‑1 (MQ=255) gTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAAGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGc < 2:37512/70‑1 (MQ=255) gTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAAGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGc > 1:37512/1‑70 (MQ=255) ccAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCt < 8:18946/78‑1 (MQ=255) ccAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCt > 7:18946/1‑78 (MQ=255) gcgcTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGt < 6:220428/149‑1 (MQ=255) cgcTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTgcgc > 5:199602/1‑145 (MQ=255) cgcTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTgcgc < 6:199602/145‑1 (MQ=255) gcTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTc > 2:177853/1‑148 (MQ=255) tGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCttcttc < 2:304706/125‑1 (MQ=255) tGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCttcttc > 1:304706/1‑125 (MQ=255) cATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGc > 2:119945/1‑148 (MQ=255) aTCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCa > 5:269616/1‑149 (MQ=255) tCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAg > 5:190691/1‑144 (MQ=255) tCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAg < 6:190691/144‑1 (MQ=255) tCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCAt > 2:142245/1‑149 (MQ=255) gTCCAGGCACTGCGGGAGGCTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTGCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGCTGAGGCGCAGCCCCAGGCGCTCGGCTGCTTCGAAGAGGATCTGCGCGCTGTCGAAGGCCATGc < 2:173572/149‑1 (MQ=255) | GATGCCCAGCCGGCGCGCGGCGCGGGCGGTCTCGCGCAGGTGCTCGGGCGGCATGGAGTAGGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGCCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGC > NC_002947/3642506‑3642798 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |