New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3642652 =	31 (0.570)	3 (0.060)	3/244	NT	8.7%	coding (553/1431 nt)	PP_3209	isoxanthopterin deaminase
	?	NC_002947	3642714 =	34 (0.670)					coding (491/1431 nt)	PP_3209	isoxanthopterin deaminase

GGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAATGATGGTCGGCCACCGTGCTGCAGCCGGAGCGGGCCAGCTCCAC  >  NC_002947/3642566‑3642859                                                                                                                                                         |                                                                                                                                                    ggcatggccttcgacagcgcacagatcctcttcgaagaagccgagcgcctggggctgcgcttcatcctttgccggggcggcgcaacCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTggg                                                                                                                                                     >  3:7392‑M1/87‑149 (MQ=255)     tggccttcgacagcgcacagatcctcttcgaagaagccgagcgcctggggctgcgcttcatcctttgccggggcggcgcaacCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTgc                                                                                                                                                 >  3:307327‑M1/83‑149 (MQ=255)               gcgcCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCgg                                                                                                                                     <  3:278648/149‑1 (MQ=255)                   cATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCa                                                                                                                                   >  1:23414/1‑147 (MQ=255)                            acGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAgg                                                                                                                               >  1:289693/1‑142 (MQ=255)                            acGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAgg                                                                                                                               <  2:289693/142‑1 (MQ=255)                                     ggCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGCCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCa                                                                                                               <  8:120228/149‑1 (MQ=255)                                       cATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAgg                                                                                                             >  5:155044/1‑149 (MQ=255)                                                         ggTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCg                                                                                              >  5:290256/1‑146 (MQ=255)                                                               ccTGTACCAAGCGCTGATCATCGTCCAGGTACTGCGTGTGGGTCTCCCTAGCCTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAaga                                                                                          <  1:284089/148‑1 (MQ=255)                                                                         gcgcTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGt                                                                           <  6:220428/149‑1 (MQ=255)                                                                          cgcTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTgcgc                                                                              >  5:199602/1‑145 (MQ=255)                                                                          cgcTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTgcgc                                                                              <  6:199602/145‑1 (MQ=255)                                                                           gcTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTc                                                                          >  2:177853/1‑148 (MQ=255)                                                                             tGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCttcttc                                                                                               <  2:304706/125‑1 (MQ=255)                                                                             tGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCttcttc                                                                                               >  1:304706/1‑125 (MQ=255)                                                                                 cATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGc                                                                    >  2:119945/1‑148 (MQ=255)                                                                                  aTCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCa                                                                  >  5:269616/1‑149 (MQ=255)                                                                                   tCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAg                                                                      >  5:190691/1‑144 (MQ=255)                                                                                   tCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAg                                                                      <  6:190691/144‑1 (MQ=255)                                                                                   tCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCAt                                                                 >  2:142245/1‑149 (MQ=255)                                                                                     gTCCAGGCACTGCGGGAGGCTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTGCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGCTGAGGCGCAGCCCCAGGCGCTCGGCTGCTTCGAAGAGGATCTGCGCGCTGTCGAAGGCCATGc                                                               <  2:173572/149‑1 (MQ=255)                                                                                      gcaacccaggtacgtcaggcggaaggccccgcgacagccggacctgagaccctcacgcagtacctggGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCa                                                                  >  3:307327‑M2/68‑149 (MQ=255)                                                                                        CAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCACGGCCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGcc                                                              <  1:107038‑M1/149‑1 (MQ=255)                                                                                         AGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGGTCTGTGCGCTGTCGAAGGCCATGCCTgg                                                           <  8:191272‑M1/149‑1 (MQ=255)                                                                                          cccaggtacgtcaggcggaaggccccgcgacagccggacctgagaccctcacgcagtacctggGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGcc                                                              >  3:7392‑M2/64‑149 (MQ=255)                                                                                           GTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGc                                                          <  2:312458‑M1/148‑1 (MQ=255)                                                                                               tGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTa                                                     >  7:69489/1‑149 (MQ=255)                                                                                                 cGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGGTCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTa                                                     <  7:191272/147‑1 (MQ=255)                                                                                                        gTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTTGAAGGCCATGCCTGGCAAGTACAGGTAatg                                            <  6:290256/149‑1 (MQ=255)                                                                                                           tc‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAatgatg                                         >  8:74500/1‑149 (MQ=255)                                                                                                           gaaggccccgcgacagccggacctgagaccctcacgcagtacctggGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAat                                             <  4:307327‑M2/103‑1 (MQ=255)                                                                                                                   gTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAATGATGGTCg                                     <  1:177853/149‑1 (MQ=255)                                                                                                                       ggCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAATGATGGTCGGCCa                                 <  6:155044/149‑1 (MQ=255)                                                                                                                         cTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACATGTAATGATGGTCGGCCAcc                               <  2:23414/149‑1 (MQ=255)                                                                                                                          tGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAATGATGGTCGGCCACCg                              >  2:93895/1‑149 (MQ=255)                                                                                                                                  ggCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAgg                                                                     <  4:228402/102‑1 (MQ=255)                                                                                                                                  ggCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAgg                                                                     >  3:228402/1‑102 (MQ=255)                                                                                                                                    ccTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAATGATGGTCGGCCACCGTGCTGCAGcc                    >  8:262742/1‑149 (MQ=255)                                                                                                                                     cTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACCGGTAATGATGGGCGGCCACCGTGCTGTAGCCg                   >  6:239541/1‑149 (MQ=255)                                                                                                                                          gCCTGACGTACCTGGGTTGCGCGGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAATGATGGTCGGCCACCGTGCTGCAGCCGGAGCg              >  7:52266/1‑149 (MQ=255)                                                                                                                                           ccTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAATGATGGTCGGCCACCGTGCTGCAGCCGGAGCgg             <  1:142245/149‑1 (MQ=255)                                                                                                                                             tGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAATGATGGTCGGCCACCGTGCTGCAGCCGGAGCGGGc           >  6:294142/1‑149 (MQ=255)                                                                                                                                                   acctggGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAATGATGGTc                                      <  7:29927‑M2/110‑1 (MQ=255)                                                                                                                                                   acctggGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAATGATGGTc                                      >  8:29927‑M2/7‑116 (MQ=255)                                                                                                                                                   acctggGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAATGATGGTCGGCCACCGTGCTGTAGCCGGAGCGGGCCAGCTc     <  5:239541‑M2/143‑1 (MQ=255)                                                                                                                                                       ggGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAg                                                  >  4:141451‑M2/3‑100 (MQ=255)                                                                                                                                                       ggGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAg                                                  <  3:141451‑M2/98‑1 (MQ=255)                                                                                                                                                        gGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAATGATGGTCGGCCACCGTGCTGCAGCCGGAGCGGGCCAGCTccac  <  6:269616‑M2/146‑1 (MQ=255)                                                                                                                                                         |                                                                                                                                                    GGGCGGACTGGTCGGCGCCATTACCACACGGCGCCAGGCATCGTCGGCGGGATCATGGTAGACCTGTACCAAGCGCTGAACATCGTCCAGGTACTGCGTGAGGGTCTC‑‑‑AG‑GTCCGGCTGTCGCGGGGCCTTCCGCCTGACGTACCTGGGTTGCGCCGC‑‑CCCGGCAAAGGATGAAGCGCAGCCCCAGGCGCTCGGCTTCTTCGAAGAGGATCTGTGCGCTGTCGAAGGCCATGCCTGGCAAGTACAGGTAATGATGGTCGGCCACCGTGCTGCAGCCGGAGCGGGCCAGCTCCAC  >  NC_002947/3642566‑3642859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.