New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3672080	34 (0.630)	5 (0.100)	5/252	NT	11.5%	coding (131/393 nt)	PP_3235	hypothetical protein
	?	NC_002947	= 3672110	44 (0.840)					coding (161/393 nt)	PP_3235	hypothetical protein

GAACATGATGTCCATTGGCAAATACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGAT  >  NC_002947/3671943‑3672228                                                                                                                                           |                                                                                                                                                     gAACATGATGTCCATTGGCAAATACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGc                                                                                                                                           <  2:146287/149‑1 (MQ=255)       gatgTCCATTGGCAAATACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGACAATGTCGACGGCGAGCGTTGTCGGccgctcg                                                                                                                                     >  8:189507/1‑144 (MQ=255)          gTCCATTGGCAAATACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAtcggtgatcaggccgatggg                                                                                                                                  >  4:21565‑M1/1‑129 (MQ=255)          gTCCATTGGCAAATACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGcc                                                                                                                                  >  4:68290/1‑149 (MQ=255)             cATTGGCAAATACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑CCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTg                                                                                                                                <  5:220142/148‑1 (MQ=255)              aTTGGCAAATACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGAt                                                                                                                              <  3:119082/149‑1 (MQ=255)                  gCAAATACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCAcc                                                                                                                          <  2:189514/149‑1 (MQ=255)                   cAAATACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCAcc                                                                                                                          >  7:264321/1‑148 (MQ=255)                     aaTACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGAt                                                                                                                       >  7:118102‑M2/1‑148 (MQ=255)                      aTACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAtcggtgatcaggccgatgggccgacaacgctc                                                                                                                      <  5:132398‑M1/149‑33 (MQ=255)                      aTACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGAtc                                                                                                                      >  8:26779‑M2/1‑147 (MQ=255)                      aTACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGAtc                                                                                                                      >  4:141759‑M2/1‑147 (MQ=255)                          tGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGCACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGa                                                                                                                  >  3:208685/1‑149 (MQ=255)                           gCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGAc                                                                                                                 >  4:79409/1‑149 (MQ=255)                            cAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAtcggtgatcaggccgatgggccgacaacgctcgccgt                                                                                                                 <  3:21565‑M1/148‑38 (MQ=255)                            cAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGc                                                                                                                                   >  7:79798/1‑130 (MQ=255)                            cAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGc                                                                                                                                   <  8:79798/130‑1 (MQ=255)                                         gTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAtcggtgatcaggccgatgggccgacaacgctcgccgtcg                                                                                                               <  3:208663‑M1/137‑40 (MQ=255)                                         gTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAtcggtgatcaggccgatgggccgacaacgctcgccgtcg                                                                                                               >  4:208663‑M1/1‑98 (MQ=255)                                          tCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGAt                                                                                                   >  6:61116/1‑148 (MQ=255)                                             ccGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCAtt                                                                                               <  5:61116/149‑1 (MQ=255)                                               gCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTgc                                                                                             <  3:68290/149‑1 (MQ=255)                                                             ctcCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCg                                                                                >  6:27860/1‑148 (MQ=255)                                                               ccATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGGGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGAt                                                                             >  7:152686/1‑149 (MQ=255)                                                               ccATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGAGACTTGTGCTGGCCGAACATGTCGACGGCGCGCGTTGTCGGCCAATCGGCCTGATCACCGATCGCGCCGTGGCGTTGCGGATCATTGCGCGCAACCCACCGGa                                                                              >  1:249666/1‑149 (MQ=255)                                                               ccATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGAt                                                                             >  7:148281/1‑149 (MQ=255)                                                                      tGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCag                                                                          <  1:176735/145‑1 (MQ=255)                                                                            ggcgCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGc                                                                <  5:27860/149‑1 (MQ=255)                                                                                    tgatgaATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTc                                                        >  8:266406/1‑149 (MQ=255)                                                                                      atgaATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGa                                                      >  4:238584/1‑149 (MQ=255)                                                                                        gaATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGt                                                         >  8:268405/1‑144 (MQ=255)                                                                                        gaATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGt                                                         <  7:268405/144‑1 (MQ=255)                                                                                              gTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAggagga                                                                     >  6:137084/1‑126 (MQ=255)                                                                                              gTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAggagga                                                                     <  5:137084/126‑1 (MQ=255)                                                                                                  cATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCg                                          <  7:189507/149‑1 (MQ=255)                                                                                                  cATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATAGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATAAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCg                                          >  7:69317/1‑149 (MQ=255)                                                                                                                         ccGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGTTCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGc                                        <  8:3457/129‑1 (MQ=255)                                                                                                                         ccGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGGTCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGc                                        >  7:3457/1‑129 (MQ=255)                                                                                                                          cGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGa                   <  8:264321/149‑1 (MQ=255)                                                                                                                                tGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAgg             <  3:79409/149‑1 (MQ=255)                                                                                                                                   cGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGAtcgccgtcgacatgttcggccagcacaagatcgccgacatggtactgattcatcatgcgcgccgcggcatagatggagataccgggtggtgcggtgac                      <  3:208663‑M2/137‑99 (MQ=255)                                                                                                                                   cGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGAtcgccgtcgacatgttcggccagcacaagatcgccgacatggtactgattcatcatgcgcgccgcggcatagatggagataccgggtggtgcggtgac                      >  4:208663‑M2/1‑39 (MQ=255)                                                                                                                                    gACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCt         >  8:70407/1‑149 (MQ=255)                                                                                                                                     aCGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGAtcgccgtcgacatgttcggccagcacaagatcgccgacatggtactgattcatcatgcgcgccgcggcatagatggagataccgggtggtgcggtgaccacgtcccggttg         <  3:21565‑M2/148‑112 (MQ=255)                                                                                                                                      cGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGt       <  4:208685/149‑1 (MQ=255)                                                                                                                                         cGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCg    >  5:190831/1‑149 (MQ=255)                                                                                                                                          gAtcggtgatcaggccgatgggccgacaacgctcgccgtcgacatgttcggccagcacaagatcgccgacatggtactgattcatcatgcgcgccgcggcatagatggagataccgggtggtgcggtgaccacgtcccggttgcagtat   >  4:141759‑M1/1‑2 (MQ=255)                                                                                                                                          gAtcggtgatcaggccgatgggccgacaacgctcgccgtcgacatgttcggccagcacaagatcgccgacatggtactgattcatcatgcgcgccgcggcatagatggagataccgggtggtgcggtgaccacgtcccggttgcagtat   >  8:26779‑M1/1‑2 (MQ=255)                                                                                                                                          gAGCGTTGTCGGCCCATCGGCCTGATCACCGAtcgccgtcgacatgttcggccagcacaagatcgccgacatggtactgattcatcatgcgcgccgcggcatagatggagataccgggtggtgcggtgaccacgtcccggttgcagtat   <  5:132398‑M2/149‑118 (MQ=255)                                                                                                                                           atcggtgatcaggccgatgggccgacaacgctcgccgtcgacatgttcggccagcacaagatcgccgacatggtactgattcatcatgcgcgccgcggcatagatggagataccgggtggtgcggtgaccacgtcccggttgcagtatt  >  7:118102‑M1/1‑1 (MQ=255)                                                                                                                                           aGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGAt  >  6:52793/1‑149 (MQ=255)                                                                                                                                           |                                                                                                                                                     GAACATGATGTCCATTGGCAAATACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGAT  >  NC_002947/3671943‑3672228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.