New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3672080	34 (0.630)	5 (0.100)	5/252	NT	11.5%	coding (131/393 nt)	PP_3235	hypothetical protein
	?	NC_002947	= 3672110	44 (0.840)					coding (161/393 nt)	PP_3235	hypothetical protein

AATACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGATGTCTTCCTCAATATGCGGCGCGCCAATAT  >  NC_002947/3671963‑3672257                                                                                                                                                     |                                                                                                                                                    aaTACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGAt                                                                                                                                                    >  7:118102‑M2/1‑148 (MQ=255)  aTACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGAtc                                                                                                                                                   >  4:141759‑M2/1‑147 (MQ=255)  aTACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGAtc                                                                                                                                                   >  8:26779‑M2/1‑147 (MQ=255)      tGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGCACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGa                                                                                                                                               >  3:208685/1‑149 (MQ=255)       gCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGAc                                                                                                                                              >  4:79409/1‑149 (MQ=255)                      tCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGAt                                                                                                                                >  6:61116/1‑148 (MQ=255)                         ccGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCAtt                                                                                                                            <  5:61116/149‑1 (MQ=255)                           gCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTgc                                                                                                                          <  3:68290/149‑1 (MQ=255)                                         ctcCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCg                                                                                                             >  6:27860/1‑148 (MQ=255)                                           ccATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGGGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGAt                                                                                                          >  7:152686/1‑149 (MQ=255)                                           ccATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGAGACTTGTGCTGGCCGAACATGTCGACGGCGCGCGTTGTCGGCCAATCGGCCTGATCACCGATCGCGCCGTGGCGTTGCGGATCATTGCGCGCAACCCACCGGa                                                                                                           >  1:249666/1‑149 (MQ=255)                                           ccATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGAt                                                                                                          >  7:148281/1‑149 (MQ=255)                                                  tGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCag                                                                                                       <  1:176735/145‑1 (MQ=255)                                                        ggcgCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGc                                                                                             <  5:27860/149‑1 (MQ=255)                                                                tgatgaATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTc                                                                                     >  8:266406/1‑149 (MQ=255)                                                                  atgaATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGa                                                                                   >  4:238584/1‑149 (MQ=255)                                                                    gaATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGt                                                                                      >  8:268405/1‑144 (MQ=255)                                                                    gaATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGt                                                                                      <  7:268405/144‑1 (MQ=255)                                                                          gTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAggagga                                                                                                  <  5:137084/126‑1 (MQ=255)                                                                          gTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAggagga                                                                                                  >  6:137084/1‑126 (MQ=255)                                                                              cATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCg                                                                       <  7:189507/149‑1 (MQ=255)                                                                              cATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATAGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATAAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCg                                                                       >  7:69317/1‑149 (MQ=255)                                                                                                     ccGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGTTCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGc                                                                     <  8:3457/129‑1 (MQ=255)                                                                                                     ccGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGGTCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGc                                                                     >  7:3457/1‑129 (MQ=255)                                                                                                      cGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGa                                                <  8:264321/149‑1 (MQ=255)                                                                                                            tGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAgg                                          <  3:79409/149‑1 (MQ=255)                                                                                                               cGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGAtcgccgtcgacatgttcggccagcacaagatcgccgacatggtactgattcatcatgcgcgccgcggcatagatggagataccgggtggtgcggtgac                                                   <  3:208663‑M2/137‑99 (MQ=255)                                                                                                               cGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGAtcgccgtcgacatgttcggccagcacaagatcgccgacatggtactgattcatcatgcgcgccgcggcatagatggagataccgggtggtgcggtgac                                                   >  4:208663‑M2/1‑39 (MQ=255)                                                                                                                gACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCt                                      >  8:70407/1‑149 (MQ=255)                                                                                                                 aCGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGAtcgccgtcgacatgttcggccagcacaagatcgccgacatggtactgattcatcatgcgcgccgcggcatagatggagataccgggtggtgcggtgaccacgtcccggttg                                      <  3:21565‑M2/148‑112 (MQ=255)                                                                                                                  cGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGt                                    <  4:208685/149‑1 (MQ=255)                                                                                                                     cGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCg                                 >  5:190831/1‑149 (MQ=255)                                                                                                                      gAGCGTTGTCGGCCCATCGGCCTGATCACCGAtcgccgtcgacatgttcggccagcacaagatcgccgacatggtactgattcatcatgcgcgccgcggcatagatggagataccgggtggtgcggtgaccacgtcccggttgcagtat                                <  5:132398‑M2/149‑118 (MQ=255)                                                                                                                       aGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGAt                               >  6:52793/1‑149 (MQ=255)                                                                                                                        gCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAAc                                              >  5:318683/1‑133 (MQ=255)                                                                                                                        gCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAAc                                              <  6:318683/133‑1 (MQ=255)                                                                                                                          gTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGATGTc                            <  7:266406/149‑1 (MQ=255)                                                                                                                           ttGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGATGTCt                           >  2:278736/1‑149 (MQ=255)                                                                                                                                 gCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGa                                            >  7:298291/1‑126 (MQ=255)                                                                                                                                 gCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGa                                            <  8:298291/126‑1 (MQ=255)                                                                                                                                  cccATCGGCCTGATCACCGAtcgccgtcgacatgttcggccagcacaagatcgccgacatggtactgattcatcatgcgcgccgcggcatagatggagataccgggtggtgcggtgaccacgtcccggttgcagtatttgccaatggac                    >  4:21565‑M2/1‑20 (MQ=255)                                                                                                                                   ccATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGATGTCTTc                         <  6:44270/143‑1 (MQ=255)                                                                                                                                   ccATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGATGTCTTc                         >  5:44270/1‑143 (MQ=255)                                                                                                                                   ccATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGATGTCTTCCTCaa                    >  2:267198/1‑148 (MQ=255)                                                                                                                                      tCGGCCACATCACCCATCCCCACCTGCCGTTCCGGATCATTGCGCGCAACCCACCGGATCACGAGGACCTGCAGACGGTCGATGTACAGACCCGGCCTCTGATCACCGAGAACCAGAACGACGACCTATTCGATCTCTACCACAATATg                >  4:211504/1‑149 (MQ=255)                                                                                                                                        ggCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGATGTCTTCCTCAATATgc               <  1:278736/148‑1 (MQ=255)                                                                                                                                         gCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGAt                                                              >  1:61205/1‑100 (MQ=255)                                                                                                                                         gCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGAt                                                              <  2:61205/100‑1 (MQ=255)                                                                                                                                           cTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGAc                                        >  4:94568/1‑120 (MQ=255)                                                                                                                                           cTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGAc                                        <  3:94568/120‑1 (MQ=255)                                                                                                                                           cTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGATGTCTTCCTCAATATgcggcg           <  2:111427/149‑1 (MQ=255)                                                                                                                                           cTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGATGACTTCCTCAATATgcggcg           >  6:354111/1‑149 (MQ=255)                                                                                                                                              aTCACCGATAGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGATGTCTTCCTCAATATGCGgcgcgc        <  8:69317/149‑1 (MQ=255)                                                                                                                                               tCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGTATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGATGTCTTCCTCAATATGCGgcgcgc        <  4:207357/148‑1 (MQ=255)                                                                                                                                                 aCCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGATGTCTTCCACAATATGCGGCGCGCCa      <  6:190831/148‑1 (MQ=255)                                                                                                                                                    gATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGACCGAGGACCTGTTCGATGTCTTCCTCAATATGCGGCGCGCCAatat  >  8:292996/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AATACTGCAACCGGGACGTGGTCACCGCACCACCCGGTATCTCCATCTATGCCGCGGCGCGCATGATGAATCAGTACCATGTCGGCGA‑TCTTGTGCTGGCCGAACATGTCGACGGCGAGCGTTGTCGGCCCATCGGCCTGATCACCGATCGCGACCTGGCGTTGCGGATCATTGCGCGCAACCCACCGGATCAGGAGGACCTGCAGGCGGTCGATGTACTGCCCCGGCCTCTGATCACCGCGAACCAGAACGAGGACCTGTTCGATGTCTTCCTCAATATGCGGCGCGCCAATAT  >  NC_002947/3671963‑3672257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.