New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4054993 =	45 (0.830)	5 (0.100)	5/250	NT	10.7%	coding (224/393 nt)	PP_3574	hypothetical protein
	?	NC_002947	4055047 =	40 (0.770)					coding (278/393 nt)	PP_3574	hypothetical protein

ATCTACGTGCGCGGCCAGGTCGGTACCGACTTCGAAGGCAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATC  >  NC_002947/4054848‑4055138                                                                                                                                                  |                                                                                                                                                   cagtcaccacccgccattcaggcctgcggtcattgctgatcgggaaccacggcgatcacgtcgatctccatcagccactcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcccac                                                                                                                                                 >  5:11637‑M1/146‑149 (MQ=255)    tACGTGCGCGGCCAGCTCGGTACCGACTTCGAACGCAAGCTGGAGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAACAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCAGTCGCACATCGACAAcaccaccac                                                                                                                                              >  7:31703/1‑149 (MQ=255)                 aGGTCGGTACCGACTTCGAAGGCAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGAc                                                                                                                                 >  6:248584/1‑149 (MQ=255)                   gTCGGTACCGACTTCGAAGGCAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCt                                                                                                                                            >  7:188969/1‑136 (MQ=255)                   gTCGGTACCGACTTCGAAGGCAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCt                                                                                                                                            <  8:188969/136‑1 (MQ=255)                    aggcccgcggtcattgctgatcgggaaccacggcgatcacgtcgatctccaccagccactcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcCCACCACCTACATCACCGACCc‑g                                                                                                                             <  4:179810‑M1/23‑1 (MQ=255)                           cGACTTCGAAGGCAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATc                                                                                                                                       <  5:273380/133‑1 (MQ=255)                           cGACTTCGAAGGCAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATc                                                                                                                                       >  6:273380/1‑133 (MQ=255)                                    aGGCAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCACGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCgg                                                                                                             >  3:253201/1‑149 (MQ=255)                                     tgatcgggaaccacggcgatcacgtcgatctccatcagccactcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcccacc                                                                                                                                                <  4:140472‑M1/5‑1 (MQ=255)                                     tgatcgggaaccacggcgatcacgtcgatctccatcagccactcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcccacc                                                                                                                                                >  3:140472‑M1/110‑114 (MQ=255)                                     ggCAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGgt                                                                                                            <  7:147536/149‑1 (MQ=255)                                     ggCAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGgt                                                                                                            <  6:212828/149‑1 (MQ=255)                                      gCAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGgtg                                                                                                           <  5:248584/149‑1 (MQ=255)                                              gtggGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGCTGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCGCGGACCTGGCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAagga                                                                                                   <  7:238406/149‑1 (MQ=255)                                                    gcgatcacgtcgatctccatcagccactcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcCCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTggg                                                                                             >  6:136268‑M1/95‑149 (MQ=255)                                                    atGGGTGACCCGCGCGCACAAACCGAAGAGTCGATGAAGAACGTCAAGGAACTTATTGAAGAAGCCGGGTCTGACCTGTCGCACATGGTCAAGTCCACCACCTACATCACCGACCC‑GCGCTTGCGCGAGCCGGTGTTCAAGGAGGTggg                                                                                             <  8:31703/148‑1 (MQ=255)                                                        tcacgtcgatctccaccagccactcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcCCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAg                                                                                         >  3:179810‑M1/91‑149 (MQ=255)                                                          gACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTg                                                                                               >  7:190329/1‑141 (MQ=255)                                                          gACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTg                                                                                               <  8:190329/141‑1 (MQ=255)                                                             ccGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGgt                                                                                                            >  6:221770/1‑125 (MQ=255)                                                             ccGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGgt                                                                                                            <  5:221770/125‑1 (MQ=255)                                                             ccGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCt                                                                                    >  2:165977/1‑149 (MQ=255)                                                                      caAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCgt                                                                           >  1:144012/1‑149 (MQ=255)                                                                         aCCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGtt                                                                        >  5:344661/1‑149 (MQ=255)                                                                            gAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTccc                                                                     >  4:310132/1‑149 (MQ=255)                                                                              aCAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGaccaccac                                                                                                                                              <  8:176879/75‑1 (MQ=255)                                                                              aCAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGaccaccac                                                                                                                                              >  7:176879/1‑75 (MQ=255)                                                                              aCAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCAc                                                                                                                                     >  2:188576/1‑84 (MQ=255)                                                                              aCAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCAc                                                                                                                                     <  1:188576/84‑1 (MQ=255)                                                                                   cctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcCCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACGAGGAGGTgg                                                                                              <  5:46473‑M1/54‑1 (MQ=255)                                                                                   cctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcCCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACGAGGAGGTgg                                                                                              >  6:46473‑M1/64‑117 (MQ=255)                                                                                        ggcttcttCAAGCAGTTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCgg                                                         >  1:64952/8‑149 (MQ=255)                                                                                          gaaCGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGt                                                       >  3:282256/1‑149 (MQ=255)                                                                                               tCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTtggtg                                                  >  5:238929/1‑149 (MQ=255)                                                                                                      gttGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCg                                           <  2:64952/147‑1 (MQ=255)                                                                                                       cTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCgg                                          <  4:282256/149‑1 (MQ=255)                                                                                                           ttGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGc                                             >  3:172778/1‑142 (MQ=255)                                                                                                           ttGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGc                                             <  4:172778/142‑1 (MQ=255)                                                                                                            tGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTgg                                     >  1:300537/1‑149 (MQ=255)                                                                                                            tGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTgg                                     >  8:294609/1‑149 (MQ=255)                                                                                                             gaagaaGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTg                                      <  1:165977/147‑1 (MQ=255)                                                                                                             gaagaaGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGc                                    >  5:270194/1‑149 (MQ=255)                                                                                                             gaagaaGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGc                                    >  4:17166/1‑149 (MQ=255)                                                                                                                gaagCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCa                                 <  6:238929/149‑1 (MQ=255)                                                                                                                   gCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAACTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGc                              >  8:175224/1‑149 (MQ=255)                                                                                                                    ccGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAgg                               >  4:197132/1‑147 (MQ=255)                                                                                                                    ccGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAgg                               <  3:197132/147‑1 (MQ=255)                                                                                                                        cTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGt                         <  2:300537/149‑1 (MQ=255)                                                                                                                           ggACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGc                      >  4:51053/1‑149 (MQ=255)                                                                                                                                tGTCGCACATCGTCAAGCCCACCACCTACATCACCGACCC‑GCGCTGCCGCGCGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTGCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATg                 >  6:68961/1‑149 (MQ=255)                                                                                                                                   cGCAAATCGTCAAGACAACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCCGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGgag              >  2:68063/1‑149 (MQ=255)                                                                                                                                     cacaTCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGAt            <  4:253201/149‑1 (MQ=255)                                                                                                                                              aaGACCACCACCTACATCACCGACCCGGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCg                                           >  1:190425/1‑110 (MQ=255)                                                                                                                                              aaGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCg                                           <  2:190425/109‑1 (MQ=255)                                                                                                                                                gACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGt                                        >  4:88335/1‑110 (MQ=255)                                                                                                                                                gACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGt                                        <  3:88335/110‑1 (MQ=255)                                                                                                                                                ctCCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATc  >  3:142670‑M1/3‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                   ATCTACGTGCGCGGCCAGGTCGGTACCGACTTCGAAGGCAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATC  >  NC_002947/4054848‑4055138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.