New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4054993 =	45 (0.830)	5 (0.100)	5/250	NT	10.7%	coding (224/393 nt)	PP_3574	hypothetical protein
	?	NC_002947	4055047 =	40 (0.770)					coding (278/393 nt)	PP_3574	hypothetical protein

CTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGACCGCAGGCCTGAATGGCGGGTGGTGACTG  >  NC_002947/4054899‑4055191                                                                                                                                                      |                                                                                                                                                 gcgatcacgtcgatctccatcagccactcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcCCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTggg                                                                                                                                                  >  6:136268‑M1/95‑149 (MQ=255) atGGGTGACCCGCGCGCACAAACCGAAGAGTCGATGAAGAACGTCAAGGAACTTATTGAAGAAGCCGGGTCTGACCTGTCGCACATGGTCAAGTCCACCACCTACATCACCGACCC‑GCGCTTGCGCGAGCCGGTGTTCAAGGAGGTggg                                                                                                                                                  <  8:31703/148‑1 (MQ=255)     tcacgtcgatctccaccagccactcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcCCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAg                                                                                                                                              >  3:179810‑M1/91‑149 (MQ=255)          ccGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCt                                                                                                                                         >  2:165977/1‑149 (MQ=255)                   caAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCgt                                                                                                                                >  1:144012/1‑149 (MQ=255)                      aCCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGtt                                                                                                                             >  5:344661/1‑149 (MQ=255)                         gAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTccc                                                                                                                          >  4:310132/1‑149 (MQ=255)                                     ggcttcttCAAGCAGTTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCgg                                                                                                              >  1:64952/8‑149 (MQ=255)                                       gaaCGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGt                                                                                                            >  3:282256/1‑149 (MQ=255)                                            tCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTtggtg                                                                                                       >  5:238929/1‑149 (MQ=255)                                                   gttGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCg                                                                                                <  2:64952/147‑1 (MQ=255)                                                    cTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCgg                                                                                               <  4:282256/149‑1 (MQ=255)                                                        ttGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGc                                                                                                  <  4:172778/142‑1 (MQ=255)                                                        ttGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGc                                                                                                  >  3:172778/1‑142 (MQ=255)                                                         tGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTgg                                                                                          >  8:294609/1‑149 (MQ=255)                                                         tGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTgg                                                                                          >  1:300537/1‑149 (MQ=255)                                                          gaagaaGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTg                                                                                           <  1:165977/147‑1 (MQ=255)                                                          gaagaaGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGc                                                                                         >  5:270194/1‑149 (MQ=255)                                                          gaagaaGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGc                                                                                         >  4:17166/1‑149 (MQ=255)                                                             gaagCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCa                                                                                      <  6:238929/149‑1 (MQ=255)                                                                gCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAACTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGc                                                                                   >  8:175224/1‑149 (MQ=255)                                                                 ccGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAgg                                                                                    >  4:197132/1‑147 (MQ=255)                                                                 ccGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAgg                                                                                    <  3:197132/147‑1 (MQ=255)                                                                     cTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGt                                                                              <  2:300537/149‑1 (MQ=255)                                                                        ggACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGc                                                                           >  4:51053/1‑149 (MQ=255)                                                                             tGTCGCACATCGTCAAGCCCACCACCTACATCACCGACCC‑GCGCTGCCGCGCGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTGCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATg                                                                      >  6:68961/1‑149 (MQ=255)                                                                                cGCAAATCGTCAAGACAACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCCGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGgag                                                                   >  2:68063/1‑149 (MQ=255)                                                                                  cacaTCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGAt                                                                 <  4:253201/149‑1 (MQ=255)                                                                                           cttgcccacctccttgtacaccggctcgcggaagcgcgggtcggtgatgtaggtggtggGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGGTGGAGATCGACGTGa                                                         >  3:179810‑M2/60‑149 (MQ=255)                                                                                           aaGACCACCACCTACATCACCGACCCGGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCg                                                                                                >  1:190425/1‑110 (MQ=255)                                                                                           aaGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCg                                                                                                <  2:190425/109‑1 (MQ=255)                                                                                             gACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGt                                                                                             >  4:88335/1‑110 (MQ=255)                                                                                             gACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGt                                                                                             <  3:88335/110‑1 (MQ=255)                                                                                             ctCCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATc                                                       >  3:142670‑M1/3‑148 (MQ=255)                                                                                               cccacctccttgtacaccggctcgcggaagcgcgggtcggtgatgtaggtggtggGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGc                                                     >  6:136268‑M2/56‑149 (MQ=255)                                                                                                ccacctcctcgtacaccggctcgcggaagcgcgggtcggtgatgtaggtggtggGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAgg                                                                                    >  6:46473‑M2/55‑117 (MQ=255)                                                                                                ccacctcctcgtacaccggctcgcggaagcgcgggtcggtgatgtaggtggtggGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAgg                                                                                    <  5:46473‑M2/63‑1 (MQ=255)                                                                                                CACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATc                                                       <  4:142670‑M1/145‑1 (MQ=255)                                                                                                CACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCg                                                   <  5:207259‑M1/149‑1 (MQ=255)                                                                                                 ACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGt                                                  >  2:144012‑M1/1‑149 (MQ=255)                                                                                                  CCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTg                                                 >  7:294609‑M1/1‑149 (MQ=255)                                                                                                    accTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGt                                               >  4:333618/1‑149 (MQ=255)                                                                                                         cATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGGTCGACGTGATCGCCGTGGTTCCCg                                          <  1:68063/149‑1 (MQ=255)                                                                                                            cACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGAt                                        >  6:231798/1‑148 (MQ=255)                                                                                                             aCCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATc                                       <  7:175224/148‑1 (MQ=255)                                                                                                             aCCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCa                                      <  6:344661/149‑1 (MQ=255)                                                                                                                      gcgcTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGAc                              >  1:147274/1‑149 (MQ=255)                                                                                                                               cgggtcggtgatgtaggtggtggGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGGTGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGACCGCGGGCCt                     <  4:179810‑M2/126‑1 (MQ=255)                                                                                                                                          aCAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCAGATTTCCACCGGTTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATAGACGTGATCGCCGAGGTTCCCGATCAGCAATGACCGCAGGCCTGAATGGCgg            >  4:100550/1‑147 (MQ=255)                                                                                                                                           cAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGACCGCAGGCCTGAATGGCGggtg         <  6:207259/149‑1 (MQ=255)                                                                                                                                           cAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGACCGCAGGCCTGAATGGCGggtg         >  1:231557/1‑149 (MQ=255)                                                                                                                                           cAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGACCGCAGGCCTGAATGGCGggtg         <  3:17166/149‑1 (MQ=255)                                                                                                                                           cAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGACCGCAGGCCTGAATGGCGggtg         >  2:81597/1‑149 (MQ=255)                                                                                                                                                 ggtggGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCa                                      <  4:140472‑M2/109‑1 (MQ=255)                                                                                                                                                 ggtggGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCa                                      >  3:140472‑M2/6‑114 (MQ=255)                                                                                                                                                  gtggGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGACCGCAGGCCTGAATGGCGGGTGGTGACTg  >  5:11637‑M2/5‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                 CTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCC‑GCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGACCGCAGGCCTGAATGGCGGGTGGTGACTG  >  NC_002947/4054899‑4055191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.