New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4298253 =	45 (0.830)	6 (0.120)	6/250	NT	13.0%	coding (39/354 nt)	PP_3769	hypothetical protein
	?	NC_002947	4298310 =	37 (0.710)					coding (96/354 nt)	PP_3769	hypothetical protein

TGGTCGTCCCTTACACAACCTTTACCGTTCCCCTGTGCTCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCATGACCGTACGG  >  NC_002947/4298109‑4298401                                                                                                                                                 |                                                                                                                                                      tGGTCGTCCCTTACACAACCTTTACCGTTCCCCTGTGCTCAGCTGACAGAGTCCGTAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑Gccc                                                                                                                                                  <  5:250801/149‑1 (MQ=255)   gtcgtcCCTTACACAACCTTTACCGTTCCCCTGTGCTCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCt                                                                                                                                                 <  4:317475/148‑1 (MQ=255)      gtcCCTTACACAACCTTTACCGTTCCCCTGTGCTCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGcc                                                                                                                                             <  5:337903/149‑1 (MQ=255)        cccTTACACAACCTTTACCGTTCCCCTGTGCTCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCa                                                                                                                                            >  3:54910/1‑148 (MQ=255)        cccTTACACAACCTTTACCGTTCCCCTGTGCTCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCa                                                                                                                                            >  3:195664/1‑148 (MQ=255)             acacAACCTTTACCGTTCCCCTGTGCTCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGc                                                                                                                                       <  7:32421/148‑1 (MQ=255)                   gcgcgtaatagaccggctggcgctcgacatacaccgtacggtcagtggccgccataaaccgtcgcccccaccacggcgccgaccactgccgcacctagaagtggtcccggcccataccaaccaccaT‑GCCCTGGCCATCAGCGGGCCTg                                                                                                                                <  1:71082‑M1/23‑1 (MQ=255)                   ccTTTACCGTTCCCCTGTGCTCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGATCCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTg                                                                                                                                <  4:62577/149‑1 (MQ=255)                   ccTTTACCGTTCCCCTGTGCTCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCTGAATCGTCCTGCTGGTCGGT‑GCCCTGTCCATCAGCGGGCCTg                                                                                                                                <  4:79347/149‑1 (MQ=255)                    cTTTACCGTTCCCCTGTGCTCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTgc                                                                                                                               <  8:306096/149‑1 (MQ=255)                    cTTTACCGTTCCCCTGTGCTCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTgc                                                                                                                               <  5:158732/149‑1 (MQ=255)                        aCCGTTCCCCTGTGCTCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTGCTGCGAGGTTGTGTTATGAACCGTCTCATTCCCGGAATCGTACTGCTGGTCGGT‑GCCCTGGCCATCCGCGGGCCTgcagca                                                                                                                           >  2:258506/1‑149 (MQ=255)                          aatagaccggctggcgctcgacatacaccgtacggtcatggccgccataaaccgtcgcccccaccacggcgccgaccactgccgcacctagaagtggtcccggcccataccaaccaccaT‑GCCCTGGCCATCAGCGGGCCTGCagcagc                                                                                                                         <  6:88848‑M1/30‑1 (MQ=255)                                ccTGTGCTCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCAcgg                                                                                                                   <  3:178547/149‑1 (MQ=255)                                      cTCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCCTCAGCGGGCCTGCAGCAGCGCACGGCGGCTa                                                                                                             >  6:62870/1‑149 (MQ=255)                                       tCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTAt                                                                                                            >  7:22497/1‑149 (MQ=255)                                       tCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTGTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTAt                                                                                                            >  4:68107/1‑149 (MQ=255)                                                agagGCCGGAGTCATAGTAACAAGACCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCCGCGCACGGCGGCTATggcggcact                                                                                                   >  7:52202/1‑146 (MQ=255)                                                  agGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATgg                                                                                                 <  4:54910/149‑1 (MQ=255)                                                  acaccgtacggtcatggccgccataaaccgtcgcccccaccacggcgccgaccactgccgcacctagaagtggtcccggcccataccaaccaccaT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATgg                                                                                                 >  5:88848‑M1/96‑149 (MQ=255)                                                   ggCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATggg                                                                                                <  8:105727/149‑1 (MQ=255)                                                   cgCCGGTGTCATAGTTACAGGGGGCCGGACGTGGGGTTTTCCTGCGTGGTTGTGTTATGAACCGTCTCATTCCCGGAATCGGCCTGCTGGGCGGTCTCGCTGGCCTTCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATg                                                                                                  <  1:258506/147‑1 (MQ=255)                                                     ccGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCAcgg                                                                                                                   >  8:169775/1‑128 (MQ=255)                                                     ccGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCAcgg                                                                                                                   <  7:169775/128‑1 (MQ=255)                                                       gtacggtcatggccgccataaaccgtcgcccccaccacggcgccgaccactgccgcacctagaagtggtcccggcccataccaaccaccaT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCAtg                                                                                            >  2:71082‑M1/91‑149 (MQ=255)                                                           tCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCAtggtgg                                                                                        >  8:18968/1‑149 (MQ=255)                                                             aTAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGtggtt                                                                                      >  5:140423/1‑149 (MQ=255)                                                             aTAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGtggtt                                                                                      >  5:143978/1‑149 (MQ=255)                                                             aTAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGtggtt                                                                                      >  7:95026/1‑149 (MQ=255)                                                              tAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGtggttg                                                                                     >  8:200513/1‑149 (MQ=255)                                                                gTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGtggttggt                                                                                   <  5:301699/149‑1 (MQ=255)                                                                    cAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATgg                                                                               <  5:62870/149‑1 (MQ=255)                                                                          cccGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCATGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCgg                                                                          >  6:173969/1‑148 (MQ=255)                                                                           ccGGACGTGGGGTTTTCCTGCGAGGTAGTTTTATGAACCGACTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATAAGAGGGCCTGCAGCAGCGCACGGCGGCTATCGCGGCCATGGGCATGGTGGTTGGTATGGACCGGGa                                                                        >  2:85051/1‑149 (MQ=255)                                                                            cGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGAc                                                                       >  8:237140/1‑149 (MQ=255)                                                                                 gTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACtt                                                                  >  2:210120/1‑149 (MQ=255)                                                                                   ggggTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGtggttg                                                                                     <  5:165073/128‑1 (MQ=255)                                                                                   ggggTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGtggttg                                                                                     >  6:165073/1‑128 (MQ=255)                                                                                    gggTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCt                                                                <  6:143978/148‑1 (MQ=255)                                                                                            cTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCgg                                                        <  4:195664/148‑1 (MQ=255)                                                                                                            tGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCgt                                        <  3:68107/148‑1 (MQ=255)                                                                                                             gcacctagaagtggtcccggcccataccaaccaccaT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCAtgg                                                                                           >  1:296543‑M1/37‑96 (MQ=255)                                                                                                             gcacctagaagtggtcccggcccataccaaccaccaT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCAtgg                                                                                           <  2:296543‑M1/60‑1 (MQ=255)                                                                                                                      cATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGa                             >  3:141689/1‑149 (MQ=255)                                                                                                                       tttCCCGGAATCGTCCTGCTGGTCGGT‑GCCGAGGCCATCAGCTGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGGGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGc                               <  8:90483/145‑1 (MQ=255)                                                                                                                       aTTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTc                                                                 >  2:270489/1‑112 (MQ=255)                                                                                                                       aTTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTc                                                                 <  1:270489/112‑1 (MQ=255)                                                                                                                              gAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTTGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTAt                     <  5:173969/149‑1 (MQ=255)                                                                                                                                      ctgctgGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATggcggc               >  2:221625/1‑147 (MQ=255)                                                                                                                                      ctgctgGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATggcggc               <  1:221625/147‑1 (MQ=255)                                                                                                                                      ctgctgGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGCGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCa             <  6:215749/149‑1 (MQ=255)                                                                                                                                      ctgctgGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGCGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCa             >  5:215749/1‑149 (MQ=255)                                                                                                                                               ggT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCATGACCGTAc    >  5:261914/1‑149 (MQ=255)                                                                                                                                               ggT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCATGACCGTAc    >  1:227928/1‑149 (MQ=255)                                                                                                                                                 T‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCATGACCGTACgg  >  7:18968‑M1/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                      TGGTCGTCCCTTACACAACCTTTACCGTTCCCCTGTGCTCAGCTGACAGAGGCCGGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGT‑GCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCATGACCGTACGG  >  NC_002947/4298109‑4298401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.