New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4298253 =	45 (0.830)	6 (0.120)	6/250	NT	13.0%	coding (39/354 nt)	PP_3769	hypothetical protein
	?	NC_002947	4298310 =	37 (0.710)					coding (96/354 nt)	PP_3769	hypothetical protein

GGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGGTGTATGTCGAGCGCCAGCCGGTCTATTACGCGCCGCCGCCGGTGTACGTACAACCGC  >  NC_002947/4298163‑4298458                                                                                                                                                    |                                                                                                                                                      gtacggtcatggccgccataaaccgtcgcccccaccacggcgccgaccactgccgcacctagaagtggtcccggcccataccaaccaccaTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCAtg                                                                                                                                                      >  2:71082‑M1/91‑149 (MQ=255)     tCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCAtggtgg                                                                                                                                                  >  8:18968/1‑149 (MQ=255)       aTAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGtggtt                                                                                                                                                >  5:143978/1‑149 (MQ=255)       aTAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGtggtt                                                                                                                                                >  5:140423/1‑149 (MQ=255)       aTAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGtggtt                                                                                                                                                >  7:95026/1‑149 (MQ=255)        tAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGtggttg                                                                                                                                               >  8:200513/1‑149 (MQ=255)          gTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGtggttggt                                                                                                                                             <  5:301699/149‑1 (MQ=255)              cAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATgg                                                                                                                                         <  5:62870/149‑1 (MQ=255)                    cccGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCATGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCgg                                                                                                                                    >  6:173969/1‑148 (MQ=255)                     ccGGACGTGGGGTTTTCCTGCGAGGTAGTTTTATGAACCGACTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATAAGAGGGCCTGCAGCAGCGCACGGCGGCTATCGCGGCCATGGGCATGGTGGTTGGTATGGACCGGGa                                                                                                                                  >  2:85051/1‑149 (MQ=255)                      cGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGAc                                                                                                                                 >  8:237140/1‑149 (MQ=255)                           gTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACtt                                                                                                                            >  2:210120/1‑149 (MQ=255)                             ggggTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGtggttg                                                                                                                                               <  5:165073/128‑1 (MQ=255)                             ggggTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGtggttg                                                                                                                                               >  6:165073/1‑128 (MQ=255)                              gggTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCt                                                                                                                          <  6:143978/148‑1 (MQ=255)                                      cTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCgg                                                                                                                  <  4:195664/148‑1 (MQ=255)                                                      tGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCgt                                                                                                  <  3:68107/148‑1 (MQ=255)                                                       gcacctagaagtggtcccggcccataccaaccaccaTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCAtgg                                                                                                                                                     <  2:296543‑M1/60‑1 (MQ=255)                                                       gcacctagaagtggtcccggcccataccaaccaccaTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCAtgg                                                                                                                                                     >  1:296543‑M1/37‑96 (MQ=255)                                                                cATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGa                                                                                       >  3:141689/1‑149 (MQ=255)                                                                 tttCCCGGAATCGTCCTGCTGGTCGGTGCCGAGGCCATCAGCTGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGGGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGc                                                                                         <  8:90483/145‑1 (MQ=255)                                                                 aTTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTc                                                                                                                           >  2:270489/1‑112 (MQ=255)                                                                 aTTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTc                                                                                                                           <  1:270489/112‑1 (MQ=255)                                                                        gAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTTGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTAt                                                                               <  5:173969/149‑1 (MQ=255)                                                                                ctgctgGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATggcggc                                                                         <  1:221625/147‑1 (MQ=255)                                                                                ctgctgGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATggcggc                                                                         >  2:221625/1‑147 (MQ=255)                                                                                ctgctgGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGCGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCa                                                                       >  5:215749/1‑149 (MQ=255)                                                                                ctgctgGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGCGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCa                                                                       <  6:215749/149‑1 (MQ=255)                                                                                        ccatgcccatggccgccatagccgccgtgcgctgctgcaggcccgctgatggccagggcaTGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGc                                                                                                                    >  1:296543‑M2/61‑96 (MQ=255)                                                                                        ccatgcccatggccgccatagccgccgtgcgctgctgcaggcccgctgatggccagggcaTGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGc                                                                                                                    <  2:296543‑M2/36‑1 (MQ=255)                                                                                         ggTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTAc                                                             >  5:261914/1‑149 (MQ=255)                                                                                         ggTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTAc                                                             >  1:227928/1‑149 (MQ=255)                                                                                         catgcccatggccgccatagccgccgtgcgctgctgcaggcccgctgatggccagggcaTGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTAc                                                             >  2:71082‑M2/60‑149 (MQ=255)                                                                                           TGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACgg                                                           >  7:18968‑M1/1‑149 (MQ=255)                                                                                              ccgggCCATGAGGGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGGGGCTGGTTTGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTTTGGCGGCCA‑TGACCGTACGgtgt                                                        <  8:52202/146‑1 (MQ=255)                                                                                              ccatggccgccatagccgccgtgcgctgctgcaggcccgctgatggccagggcaTGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGgtgt                                                        >  5:88848‑M2/55‑149 (MQ=255)                                                                                              CCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGgtg                                                         <  3:31935‑M1/148‑1 (MQ=255)                                                                                              CCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGGCGGCGCCGTGGTGGGGGCTACGGTTTATGGCGGCCA‑TGACCGTACGgtgt                                                        >  1:210120‑M1/1‑149 (MQ=255)                                                                                               CTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGGTGTa                                                       >  4:141689‑M1/1‑149 (MQ=255)                                                                                                      tCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGGTTATGGCGGCCA‑TGACCGTACGGTGTATGTCGAg                                                >  2:274883/1‑149 (MQ=255)                                                                                                         gCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGGTGTATGTCGAgcgc                                             <  6:261914/149‑1 (MQ=255)                                                                                                                     caggGCACGGCGGCTATGGCGGCGATGGGCTTGGTGGTTGGTTTGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCGGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGGTGTATGGCGAGCGCCAGCCGGTCTAt                                 <  8:95026/149‑1 (MQ=255)                                                                                                                      gctgctgcaggcccgctgatggccagggcaTGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGGTGTATGTCGAGCGCCAGCCGGTCTAtt                                <  6:88848‑M2/119‑1 (MQ=255)                                                                                                                      agcGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGGGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGGTGTATGTCGAGCGCCAGCCGGTCTAtt                                <  6:140423/149‑1 (MQ=255)                                                                                                                          cACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCTGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGGTGTATGTCGAGCGCCAGCCGGTCTATTAcgc                            <  4:31935/149‑1 (MQ=255)                                                                                                                           aCGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGGTGTATGTCGAGCGCCAGCCGGTCt                                   <  6:303117/141‑1 (MQ=255)                                                                                                                           aCGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGGTGTATGTCGAGCGCCAGCCGGTCt                                   >  5:303117/1‑141 (MQ=255)                                                                                                                             caggcccgctgatggccagggcaTGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCACTGACCGTACGGTGTATGTCGAGCGCCAGCCGGTCTATTACgcgc                          <  1:71082‑M2/126‑1 (MQ=255)                                                                                                                                  cTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGGTGTATGTCGAGCGCCAGc                                         >  6:237249/1‑128 (MQ=255)                                                                                                                                  cTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGGTGTATGTCGAGCGCCAGc                                         <  5:237249/128‑1 (MQ=255)                                                                                                                                          gcCATGGGCATGGTGGTTGGTATGGTCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGGTGTATGTCGAGCGCCAGCCGGTCTATTACGCGCCGCCGCCGGTgtac            <  1:85051/149‑1 (MQ=255)                                                                                                                                                    tggtggTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGGTGTATGTCGAGCGCCAGCCGGTCTATTACGCGCCGCCGCCGGTGTACGTACAACCGc  <  8:22497/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      GGAGTCATAGTAACAGGGCCCCGGACGTGGGGTTTTCCTGCGAGGTTGTTTTATGAACCGTCTCATTCCCGGAATCGTCCTGCTGGTCGGTGCCCTGGCCATCAGCGGGCCTGCAGCAGCGCACGGCGGCTATGGCGGCCATGGGCATGGTGGTTGGTATGGGCCGGGACCACTTCTAGGTGCGGCAGTGGTCGGCGCCGTGGTGGGGGCGACGGTTTATGGCGGCCA‑TGACCGTACGGTGTATGTCGAGCGCCAGCCGGTCTATTACGCGCCGCCGCCGGTGTACGTACAACCGC  >  NC_002947/4298163‑4298458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.