New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4299561 =	47 (0.870)	3 (0.060)	3/248	NT	6.9%	coding (192/870 nt)	PP_3772	repressor protein‑like protein
	?	NC_002947	4299600 =	36 (0.700)					coding (231/870 nt)	PP_3772	repressor protein‑like protein

CATGGACATCTACCAAATTCGCAAGCACAACCTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAA  >  NC_002947/4299414‑4299690                                                                                                                                                    |                                                                                                                                  cATGGACATCTACCAAATTCGCAAGCACAACCTGGTGAAGCTGATCGGCAGCCAGAGCAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACg                                                                                                                                  <  3:3957/149‑1 (MQ=255)   tGGACATCTACCAAATTCGCAAGCACAACCTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTg                                                                                                                                <  3:156070/149‑1 (MQ=255)   cagcctttgccgggtttcttcggagatacctttgccgcttcgggccagcatctgtttgaccaggtcggctgcagagagcttgttgtcacctggctcgacagccgcttgtgcgtgttcgcctggcgacagcgcgtcgaaccagcccCGTg                                                                                                                                >  6:213474‑M1/146‑149 (MQ=255)      cctttgccgggtttcttcggagatacctttgccgcttcgggccagcatctgtttgaccaggtcggctgcagagagcttgttgtcacctggctcgacagccgcttgtgcgtgttcgcctggcgacagcgcgtcgaaccagcccCGTGGcc                                                                                                                             <  7:94253‑M1/7‑1 (MQ=255)           tACCAAATTCGCAAGCACAACCTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCGGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCccgccg                                                                                                                        >  7:230089/1‑149 (MQ=255)             ccAAATTCGCAAGCACAACCTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCa                                                                                                                      >  4:121344/1‑149 (MQ=255)                 aTTCGCAAGCACAACCTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGa                                                                                                                  <  2:192837/149‑1 (MQ=255)                    cGCAAGCACAACCTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAgg                                                                                                                <  1:114852/148‑1 (MQ=255)                    cGCAAGCACAACCTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAgg                                                                                                                <  7:295779/148‑1 (MQ=255)                       aaGCACAACCTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCAt                                                                                                            >  3:71963/1‑149 (MQ=255)                           acaACCTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTg                                                                                                                                >  7:253642/1‑125 (MQ=255)                           acaACCTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTg                                                                                                                                <  8:253642/125‑1 (MQ=255)                            caACCTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAg                                                                                                       <  3:121344/149‑1 (MQ=255)                             acccTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAgg                                                                                                      <  5:292348/147‑1 (MQ=255)                               ccTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCt                                                                                                    >  8:243361/1‑149 (MQ=255)                                cTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCtt                                                                                                   >  2:252292/1‑149 (MQ=255)                                      cgcttcgggccagcatctgtttgaccaggtcggctgcagagagcttgttgtcacctggctcgacagccgcttgtgcgtgttcgcctggcgacagcgcgtcgaaccagcccCGTGGCCCGCCGCATCGAGGGCCTCGAAGGCTTGCCACg                                                                                             >  8:94253‑M1/111‑149 (MQ=255)                                       aGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACgg                                                                                            <  4:150111/149‑1 (MQ=255)                                         cTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACgggg                                                                                          <  5:35703/149‑1 (MQ=255)                                           gATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCt                                                                                        >  8:80851/1‑149 (MQ=255)                                           gATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCt                                                                                        >  5:220558/1‑149 (MQ=255)                                             tCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTgg                                                                                      <  2:235425/149‑1 (MQ=255)                                                 cAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTc                                                                                   >  8:61129/1‑148 (MQ=255)                                                   gCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGAc                                                                                >  6:305368/1‑149 (MQ=255)                                                    ccAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTc                                                                                   >  6:12361/1‑145 (MQ=255)                                                    ccAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTc                                                                                   <  5:12361/145‑1 (MQ=255)                                                     cAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGAcgc                                                                              >  3:85091/1‑149 (MQ=255)                                                     cAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGAcgc                                                                              <  7:80851/149‑1 (MQ=255)                                                       gagaAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGAcgcga                                                                            <  6:220558/149‑2 (MQ=255)                                                            gaccaggtcggctgcagagagcttgttgtcacctggctcgacagccgcttgtgcgtgttcgcctggcgacagcgcgtcgaaccagcccCGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACggg                                                                                           <  1:269928‑M1/41‑1 (MQ=255)                                                            gaccaggtcggctgcagagagcttgttgtcacctggctcgacagccgcttgtgcgtgttcgcctggcgacagcgcgtcgaaccagcccCGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACggg                                                                                           >  2:269928‑M1/89‑129 (MQ=255)                                                              ggCACCTGCGCAGAGCGCTGGGGGATAGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGc                                                                      >  1:77766/1‑148 (MQ=255)                                                                 aCCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTc                                                                        <  7:4760/143‑1 (MQ=255)                                                                 aCCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTc                                                                        >  8:4760/1‑143 (MQ=255)                                                                      cgcAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACgggg                                                                                          >  8:302031/1‑120 (MQ=255)                                                                      cgcAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACgggg                                                                                          <  7:302031/120‑1 (MQ=255)                                                                          gagCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGc                                                         <  1:252292/149‑1 (MQ=255)                                                                                  ggggATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGc                                                   <  5:305368/147‑1 (MQ=255)                                                                                   gggATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGc                                                <  8:230089/149‑1 (MQ=255)                                                                                   gggATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCAGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGc                                                >  7:122994/1‑149 (MQ=255)                                                                                         gcgcCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCCGTCGa                                          <  7:61129/149‑1 (MQ=255)                                                                                                 acacCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGAGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCg                                           <  3:252944/140‑1 (MQ=255)                                                                                                 acacCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGAGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCg                                           >  4:252944/1‑140 (MQ=255)                                                                                                    ccTTAGCCAGCTCCTTTCCGACACGCCCCTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCCGCGAAGGCTTGCCACGGGGCTGCTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGaca                               <  2:242137/149‑1 (MQ=255)                                                                                                     cTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGacaa                              <  2:77766/149‑1 (MQ=255)                                                                                                         gCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAg                          <  4:71963/149‑1 (MQ=255)                                                                                                          ccAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAg                                     <  3:215082/137‑1 (MQ=255)                                                                                                          ccAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAg                                     >  4:215082/1‑137 (MQ=255)                                                                                                                 cTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGc                  <  7:11353/149‑1 (MQ=255)                                                                                                                    tCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAg                <  7:243361/148‑1 (MQ=255)                                                                                                                    tCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGc               >  8:245446/1‑149 (MQ=255)                                                                                                                               cGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGcc                                       <  4:245878/114‑1 (MQ=255)                                                                                                                               cGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGcc                                       >  3:245878/1‑114 (MQ=255)                                                                                                                               cGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGGCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCa    <  4:331130/149‑1 (MQ=255)                                                                                                                               cGTGAAAAACCTGGGAGATGACGTGGCCCGCCTCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCa    <  8:122994/149‑1 (MQ=255)                                                                                                                                     aaaCCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCaaa  >  2:15921/1‑145 (MQ=255)                                                                                                                                                    |                                                                                                                                  CATGGACATCTACCAAATTCGCAAGCACAACCTGGTGAAGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAA  >  NC_002947/4299414‑4299690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.