New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4299561 =	47 (0.870)	3 (0.060)	3/248	NT	6.9%	coding (192/870 nt)	PP_3772	repressor protein‑like protein
	?	NC_002947	4299600 =	36 (0.700)					coding (231/870 nt)	PP_3772	repressor protein‑like protein

AGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAGGCTG  >  NC_002947/4299452‑4299744                                                                                                                                                     |                                                                                                                                                 aGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACgg                                                                                                                                                  <  4:150111/149‑1 (MQ=255)   cTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACgggg                                                                                                                                                <  5:35703/149‑1 (MQ=255)     gATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCt                                                                                                                                              >  5:220558/1‑149 (MQ=255)     gATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCt                                                                                                                                              >  8:80851/1‑149 (MQ=255)       tCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTgg                                                                                                                                            <  2:235425/149‑1 (MQ=255)           cAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTc                                                                                                                                         >  8:61129/1‑148 (MQ=255)             gCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGAc                                                                                                                                      >  6:305368/1‑149 (MQ=255)              ccAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTc                                                                                                                                         <  5:12361/145‑1 (MQ=255)              ccAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTc                                                                                                                                         >  6:12361/1‑145 (MQ=255)               cAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGAcgc                                                                                                                                    >  3:85091/1‑149 (MQ=255)               cAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGAcgc                                                                                                                                    <  7:80851/149‑1 (MQ=255)                 gagaAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGAcgcga                                                                                                                                  <  6:220558/149‑2 (MQ=255)                      gaccaggtcggctgcagagagcttgttgtcacctggctcgacagccgcttgtgcgtgttcgcctggcgacagcgcgtcgaaccagcccCGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACggg                                                                                                                                                 >  2:269928‑M1/89‑129 (MQ=255)                      gaccaggtcggctgcagagagcttgttgtcacctggctcgacagccgcttgtgcgtgttcgcctggcgacagcgcgtcgaaccagcccCGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACggg                                                                                                                                                 <  1:269928‑M1/41‑1 (MQ=255)                        ggCACCTGCGCAGAGCGCTGGGGGATAGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGc                                                                                                                            >  1:77766/1‑148 (MQ=255)                           aCCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTc                                                                                                                              >  8:4760/1‑143 (MQ=255)                           aCCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTc                                                                                                                              <  7:4760/143‑1 (MQ=255)                                cgcAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACgggg                                                                                                                                                >  8:302031/1‑120 (MQ=255)                                cgcAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACgggg                                                                                                                                                <  7:302031/120‑1 (MQ=255)                                    gagCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGc                                                                                                               <  1:252292/149‑1 (MQ=255)                                            ggggATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGc                                                                                                         <  5:305368/147‑1 (MQ=255)                                             gggATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGc                                                                                                      <  8:230089/149‑1 (MQ=255)                                             gggATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCAGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGc                                                                                                      >  7:122994/1‑149 (MQ=255)                                                   gcgcCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCCGTCGa                                                                                                <  7:61129/149‑1 (MQ=255)                                                           acacCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGAGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCg                                                                                                 >  4:252944/1‑140 (MQ=255)                                                           acacCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGAGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCg                                                                                                 <  3:252944/140‑1 (MQ=255)                                                              ccTTAGCCAGCTCCTTTCCGACACGCCCCTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCCGCGAAGGCTTGCCACGGGGCTGCTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGaca                                                                                     <  2:242137/149‑1 (MQ=255)                                                               cTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGacaa                                                                                    <  2:77766/149‑1 (MQ=255)                                                                   gCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAg                                                                                <  4:71963/149‑1 (MQ=255)                                                                    ccAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAg                                                                                           <  3:215082/137‑1 (MQ=255)                                                                    ccAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAg                                                                                           >  4:215082/1‑137 (MQ=255)                                                                           cTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGc                                                                        <  7:11353/149‑1 (MQ=255)                                                                              tCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAg                                                                      <  7:243361/148‑1 (MQ=255)                                                                              tCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGc                                                                     >  8:245446/1‑149 (MQ=255)                                                                                         cGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGcc                                                                                             >  3:245878/1‑114 (MQ=255)                                                                                         cGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGcc                                                                                             <  4:245878/114‑1 (MQ=255)                                                                                         cGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGGCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCa                                                          <  4:331130/149‑1 (MQ=255)                                                                                         cGTGAAAAACCTGGGAGATGACGTGGCCCGCCTCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCa                                                          <  8:122994/149‑1 (MQ=255)                                                                                               aaaCCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCaaa                                                        >  2:15921/1‑145 (MQ=255)                                                                                                            cccgtggcaagccttcgatgccctcgatgcggcgggccacgGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTc                                                           >  2:269928‑M2/42‑129 (MQ=255)                                                                                                            cccgtggcaagccttcgatgccctcgatgcggcgggccacgGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTc                                                           <  1:269928‑M2/88‑1 (MQ=255)                                                                                                              cgtggcaagccttcgaggccctcgatgcggcgggccacgGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCg                                     >  8:94253‑M2/40‑149 (MQ=255)                                                                                                               GTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGCACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCgg                                    >  4:85091‑M1/1‑149 (MQ=255)                                                                                                               GTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCgg                                    <  6:277423‑M1/149‑1 (MQ=255)                                                                                                               GTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCgg                                    >  1:15921‑M1/1‑149 (MQ=255)                                                                                                                    ccgccgCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAg                               <  7:245446/149‑1 (MQ=255)                                                                                                                        cgcATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGAcc                                                                >  2:339329/1‑112 (MQ=255)                                                                                                                        cgcATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGAcc                                                                <  1:339329/112‑1 (MQ=255)                                                                                                                               aGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCgaa                    <  5:277423/149‑1 (MQ=255)                                                                                                                                gggCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGACAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCg                      >  7:75219/1‑146 (MQ=255)                                                                                                                                             ttGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAg                               <  6:228637/124‑1 (MQ=255)                                                                                                                                             ttGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAg                               >  5:228637/1‑124 (MQ=255)                                                                                                                                             ttGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAg      >  2:37905/1‑149 (MQ=255)                                                                                                                                              ggccacgGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAgg     <  7:94253‑M2/142‑1 (MQ=255)                                                                                                                                                 cacgGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAGgctg  >  6:213474‑M2/5‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 AGCTGATCGGCAGCCAGAGAAAGGGCACCTGCGCAGAGCGCTGGGGGATGGCGCCTGCACACCTTAGCCAGATCCTTTCCGACAAGACCGTGAAAAACCTGGGCGATGACGTGGCCCGCCGCATCGAGGGCATCGAAGGCTTGCCACGGGGCTGGTTCGACGCGCTGTCGCCAGGCGAACACGCACAAGCGGCTGTCGAGCCAGGTGACAACAAGCTCTCTGCAGCCGACCTGGTCAAACAGATGCTGGCCCGAAGCGGCAAAGGTATCTCCGAAGAAACCCGGCAAAGGCTG  >  NC_002947/4299452‑4299744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.