New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5237745 =	45 (0.830)	3 (0.060)	3/250	NT	6.7%	coding (205/387 nt)	PP_4614	hypothetical protein
	?	NC_002947	5237780 =	40 (0.770)					coding (240/387 nt)	PP_4614	hypothetical protein

TCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGT  >  NC_002947/5237597‑5237888                                                                                                                                                     |                                                                                                                                                 tcaattggcaacaaaatggcgcggctcgtggcgggcgtcacgggtcagcgcggccagcacttgcaggcggttctggctgagttcgatcgcaaggcccaggcggatgctgtcgatcacccgttgcaggcgcaccgggtcattgcgttggg                                                                                                                                                  <  4:322678‑M1/1‑1 (MQ=255)    ggTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCg                                                                                                                                               >  5:113212/1‑149 (MQ=255)     ttggcaacaaaatggcgcggctcgtggcgggcgtcacgggtcagcgcggccagcacttgcagggggttctggctgagttcgatcgcaaggcccaggcggatgctgtcgatcacccgttgcaggcgcaccgggtcattgcgttggGCCgg                                                                                                                                              >  3:322678‑M1/145‑149 (MQ=255)     gTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCgg                                                                                                                                              >  1:228442/1‑149 (MQ=255)            tctGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGATGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTc                                                                                                                                       >  3:45568/1‑149 (MQ=255)                        cccGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCtc                                                                                                                           <  5:243128/148‑1 (MQ=255)                        acCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCtc                                                                                                                           <  1:325330/149‑1 (MQ=255)                        acCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCAGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCt                                                                                                                            >  5:124690/1‑148 (MQ=255)                          cGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCtcat                                                                                                                         >  6:55778/1‑149 (MQ=255)                           gCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCtcat                                                                                                                         >  1:133899/1‑148 (MQ=255)                                 gCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCg                                                                                                                  >  8:238093/1‑149 (MQ=255)                                        cATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAAc                                                                                                           >  1:26910/1‑149 (MQ=255)                                        acgggtcagcgcggccagcacttgcagggggttctggctgagttcgatcgcaaggcccaggcggatgctgtcgatcacccgttgcaggcgcaccgggtcattgcgttggGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAAc                                                                                                           >  5:250517‑M1/110‑149 (MQ=255)                                         aTGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGATGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACg                                                                                                          <  4:45568/149‑1 (MQ=255)                                           gAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAAAACCGCGTGAACCTGAGCATTGCCAACCTCGACGCCAGCATCAAGCTGACACTGTCCGACGACGCCGCCGACGTCCCCAAGCGCCACATCACACCGCCCCAACGc                                                                                                         >  1:138403/1‑148 (MQ=255)                                             acaacCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCaa                                                                                                       <  5:55778/148‑1 (MQ=255)                                             acaacCCATTCGAACGAATCAGTGCTCCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATTCTGACCCTGGCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCaaa                                                                                                      <  7:218669/149‑2 (MQ=255)                                                 cccATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCAc                                                                                                                      >  7:273072/1‑129 (MQ=255)                                                 cccATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCAc                                                                                                                      <  8:273072/129‑1 (MQ=255)                                                 cccATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGAcc                                                                                                  >  3:291618/1‑149 (MQ=255)                                                 cccATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGAcc                                                                                                  >  6:140243/1‑149 (MQ=255)                                                 cccATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGAcc                                                                                                  <  2:228442/149‑1 (MQ=255)                                                         aacgaaTCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTgcgc                                                                                          <  2:133899/149‑1 (MQ=255)                                                            gaaTCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCAATGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTc                                                                                                                                       >  8:173177/1‑101 (MQ=255)                                                                   tgctgcATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCg                                                                                                                  >  4:186524/1‑115 (MQ=255)                                                                   tgctgcATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCg                                                                                                                  <  3:186524/115‑1 (MQ=255)                                                                   tgctgcATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACggg                                                                                <  5:140243/149‑1 (MQ=255)                                                                     ctgcATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGt                                                                               <  7:238093/148‑1 (MQ=255)                                                                     ctgcAATCGCCCCCCAATACCGGCTGAACCTGAGCATTGCCAACCTCGACGGCACCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATTACCCAGAGCGCCTGCAACGGGt                                                                               >  4:159542/1‑148 (MQ=255)                                                                        cATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGa                                                                             <  3:159542/147‑1 (MQ=255)                                                                                       tcgcaaggcccaggcggatgctgtcgatcacccgttgcaggcgcaccgggtcattgcgttggGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCgg                                                                                                                 >  2:31395‑M1/63‑96 (MQ=255)                                                                                       tcgcaaggcccaggcggatgctgtcgatcacccgttgcaggcgcaccgggtcattgcgttggGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCgg                                                                                                                 <  1:31395‑M1/34‑1 (MQ=255)                                                                                           ggTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACgg                                                                                 >  7:305615/1‑124 (MQ=255)                                                                                           ggTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACgg                                                                                 <  8:305615/124‑1 (MQ=255)                                                                                               aaCCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTg                                                    <  4:291618/148‑1 (MQ=255)                                                                                                  cTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCATCGGGTGATCGA‑CAGCATCCGCCTGGGCCTTg                                                    <  4:160682/145‑1 (MQ=255)                                                                                                  cTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAAAGACCCGGTGCGCCTGCATCGGGTGATCGA‑CAGCATCCGCCTGCGCCTTg                                                    >  3:160682/1‑145 (MQ=255)                                                                                                            ccAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCg                                                  <  4:326018/137‑1 (MQ=255)                                                                                                            ccAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCg                                                  >  3:326018/1‑137 (MQ=255)                                                                                                            ccAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGc                                      >  6:49318/1‑149 (MQ=255)                                                                                                             cAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCACGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGc                                      >  7:245866/1‑148 (MQ=255)                                                                                                             cAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGcc                                     <  5:49318/149‑1 (MQ=255)                                                                                                                 cTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGaa                                 >  5:50330/1‑149 (MQ=255)                                                                                                                   cGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAAcc                               <  6:50330/149‑1 (MQ=255)                                                                                                                     aCGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAAcccc                             <  2:26910/149‑1 (MQ=255)                                                                                                                       ggCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCGGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGCTCGACCTCAGCCAGACCCCCCt                           >  4:54779/1‑149 (MQ=255)                                                                                                                               catGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGc                   >  4:320693/1‑149 (MQ=255)                                                                                                                                  gCTGACCCTGTCCGACGACGCCGGCGTTGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGcc                                     <  5:338366/128‑1 (MQ=255)                                                                                                                                  gCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGcc                                     >  6:338366/1‑128 (MQ=255)                                                                                                                                         gtggccgccgACGCCGGGGTGGTCGCCAAGCCCCTAATCACCCCGGCCCAACCAAATTACCCGGTGCGCCTGCAACGGGTTATCCATCAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCgcgc          <  1:275821/145‑1 (MQ=255)                                                                                                                                            tCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCATTGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGAc      <  3:54779/149‑1 (MQ=255)                                                                                                                                               gacgacGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCg   >  4:124322/1‑149 (MQ=255)                                                                                                                                                acgacgCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGt  <  6:124690/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 TCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGGTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGT  >  NC_002947/5237597‑5237888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.