New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5237745 =	45 (0.830)	3 (0.060)	3/250	NT	6.7%	coding (205/387 nt)	PP_4614	hypothetical protein
	?	NC_002947	5237780 =	40 (0.770)					coding (240/387 nt)	PP_4614	hypothetical protein

CATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAG  >  NC_002947/5237636‑5237928                                                                                                                                                 |                                                                                                                                                       cATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAAc                                                                                                                                                    >  1:26910/1‑149 (MQ=255) acgggtcagcgcggccagcacttgcagggggttctggctgagttcgatcgcaaggcccaggcggatgctgtcgatcacccgttgcaggcgcaccgggtcattgcgttggGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAAc                                                                                                                                                    >  5:250517‑M1/110‑149 (MQ=255)  aTGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGATGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACg                                                                                                                                                   <  4:45568/149‑1 (MQ=255)    gAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAAAACCGCGTGAACCTGAGCATTGCCAACCTCGACGCCAGCATCAAGCTGACACTGTCCGACGACGCCGCCGACGTCCCCAAGCGCCACATCACACCGCCCCAACGc                                                                                                                                                  >  1:138403/1‑148 (MQ=255)      acaacCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCaa                                                                                                                                                <  5:55778/148‑1 (MQ=255)      acaacCCATTCGAACGAATCAGTGCTCCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATTCTGACCCTGGCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCaaa                                                                                                                                               <  7:218669/149‑2 (MQ=255)          cccATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGAcc                                                                                                                                           <  2:228442/149‑1 (MQ=255)          cccATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGAcc                                                                                                                                           >  3:291618/1‑149 (MQ=255)          cccATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGAcc                                                                                                                                           >  6:140243/1‑149 (MQ=255)                  aacgaaTCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTgcgc                                                                                                                                   <  2:133899/149‑1 (MQ=255)                            tgctgcATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACgg‑g                                                                                                                        <  5:140243/149‑1 (MQ=255)                              ctgcATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑Gt                                                                                                                       <  7:238093/148‑1 (MQ=255)                              ctgcAATCGCCCCCCAATACCGGCTGAACCTGAGCATTGCCAACCTCGACGGCACCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATTACCCAGAGCGCCTGCAACGG‑Gt                                                                                                                       >  4:159542/1‑148 (MQ=255)                                 cATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGa                                                                                                                     <  3:159542/147‑1 (MQ=255)                                                    ggTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACgg                                                                                                                          >  7:305615/1‑124 (MQ=255)                                                    ggTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACgg                                                                                                                          <  8:305615/124‑1 (MQ=255)                                                        aaCCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTg                                                                                            <  4:291618/148‑1 (MQ=255)                                                           cTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCATCGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTg                                                                                            <  4:160682/145‑1 (MQ=255)                                                           cTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAAAGACCCGGTGCGCCTGCATCGG‑GTGATCGA‑CAGCATCCGCCTGCGCCTTg                                                                                            >  3:160682/1‑145 (MQ=255)                                                                     ccAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCg                                                                                          >  3:326018/1‑137 (MQ=255)                                                                     ccAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCg                                                                                          <  4:326018/137‑1 (MQ=255)                                                                     ccAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGc                                                                              >  6:49318/1‑149 (MQ=255)                                                                      cAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCACGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGc                                                                              >  7:245866/1‑148 (MQ=255)                                                                      cAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGcc                                                                             <  5:49318/149‑1 (MQ=255)                                                                          cTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGaa                                                                         >  5:50330/1‑149 (MQ=255)                                                                            cGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAAcc                                                                       <  6:50330/149‑1 (MQ=255)                                                                              aCGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAAcccc                                                                     <  2:26910/149‑1 (MQ=255)                                                                                ggCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCGGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGCTCGACCTCAGCCAGACCCCCCt                                                                   >  4:54779/1‑149 (MQ=255)                                                                                        catGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGc                                                           >  4:320693/1‑149 (MQ=255)                                                                                           gCTGACCCTGTCCGACGACGCCGGCGTTGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGcc                                                                             <  5:338366/128‑1 (MQ=255)                                                                                           gCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGcc                                                                             >  6:338366/1‑128 (MQ=255)                                                                                                  gtggccgccgACGCCGGGGTGGTCGCCAAGCCCCTAATCACCCCGGCCCAACCAAATTACCCGGTGCGCCTGCAACGG‑GTTATCCATCAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCgcgc                                                  <  1:275821/145‑1 (MQ=255)                                                                                                     tCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCATTGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGAc                                              <  3:54779/149‑1 (MQ=255)                                                                                                        gacgacGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCg                                           >  4:124322/1‑149 (MQ=255)                                                                                                         gttgggccggggtgatgaggcgcttggcgaccacgccggcCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGt                                          >  5:250517‑M2/41‑149 (MQ=255)                                                                                                         acgacgCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGt                                          <  6:124690/149‑1 (MQ=255)                                                                                                               ccggggtgatgaggcgcttggcgaccacgccggcCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGa                                                                                         >  2:31395‑M2/35‑96 (MQ=255)                                                                                                               ccggggtgatgaggcgcttggcgaccacgccggcCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGa                                                                                         <  1:31395‑M2/62‑1 (MQ=255)                                                                                                                CGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGAcgccc                                   <  8:206692‑M1/149‑1 (MQ=255)                                                                                                                       gTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGGTCTGATCGA‑CACCATCCGCCAGGGCCTTGCGATCGAACTCCGCCAGAACCCCCTGCAAGAGCTGGCCGCGCTGACCCGTGCCGCCCGCCaa                              >  1:94881/1‑147 (MQ=255)                                                                                                                       gTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCGAGAACCCCCTGCAAGTGCTGGCCGCGCTGCCCCGTGACGCCCGCCACGa                            >  5:65228/1‑149 (MQ=255)                                                                                                                         cGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGc                          >  2:187760/1‑149 (MQ=255)                                                                                                                                   cTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCAttt                >  3:166458/1‑149 (MQ=255)                                                                                                                                   cTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCAttt                >  3:240185/1‑149 (MQ=255)                                                                                                                                    tcatcaCCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCAtttt               >  1:199722/1‑149 (MQ=255)                                                                                                                                      atcaCCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTttgt             >  4:16707/1‑149 (MQ=255)                                                                                                                                        caCCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCGCGAGCCGCGCCATTttgttg           >  3:57164/1‑149 (MQ=255)                                                                                                                                        caCCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTttgttg           >  6:332359/1‑149 (MQ=255)                                                                                                                                            ccggcCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCaa       >  3:322678‑M2/6‑149 (MQ=255)                                                                                                                                                cCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCGCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGa   <  4:322678‑M2/148‑1 (MQ=255)                                                                                                                                                 ccAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAg  <  4:240185/149‑1 (MQ=255)                                                                                                                                                 ccAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAg  <  2:94881/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                       CATGAACAACCCATTCGAACGAATCAGTGCTGCATTCGCCCCCGAATACCGGGTGAACCTGAGCATTGCCAACCTCGACGGCAGCATCATGCTGACCCTGTCCGACGACGCCGGCGTGGTCGCCAAGCGCCTCATCACCCCGGCCCAACGCAATGACCCGGTGCGCCTGCAACGG‑GTGATCGA‑CAGCATCCGCCTGGGCCTTGCGATCGAACTCAGCCAGAACCCCCTGCAAGTGCTGGCCGCGCTGACCCGTGACGCCCGCCACGAGCCGCGCCATTTTGTTGCCAATTGAG  >  NC_002947/5237636‑5237928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.