New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5458249 =	45 (0.830)	4 (0.080)	4/254	NT	7.1%	coding (1981/2607 nt)	leuS	leucine‑‑tRNA ligase
	?	NC_002947	5458336 =	61 (1.150)					coding (2068/2607 nt)	leuS	leucine‑‑tRNA ligase

GCCTGAAGACCGACGGCTTGCCGGTGGAAATCGGTGGCACCGAGAAAATGTCGAAGTCGAAAAACAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATGTTGCCGCCCTGGACGACGCGCAAAAGGT  >  NC_002947/5458103‑5458391                                                                                                                                                    |                                                                                                                                                gccTGAAGACCGACGGCTTGCCGGTGGAAATCGGTGGCACCGAGAAAATGTCGAAGTCGAAAAACAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGa                                                                                                                                                >  8:102217/1‑148 (MQ=255)   tcacctgggcgatggcggtattgaacttgtggaactggcccacgtcggtgctggcctgcttgatggcagcgtgaatggcgcggcggatgaccttttgcgcgtcgtccagggcggcaacatccagcgtgcagggccggccctggctgctg                                                                                                                                              <  6:239077‑M1/4‑4 (MQ=255)      aaGACCGACGGCTTGCCGGTGGAAAGCGGTGGCACCGAGAAAATGTCGAAGTCGAAAAACAACGGCGTCGTCCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGa                                                                                                                                           <  7:245839/148‑1 (MQ=255)         aCCGACGGCTTGCCGGTGGAAATCGGTGGCACCGAGAAAATGTCGAAGTCGAAAAACAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACAGCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCt                                                                                                                                       <  1:246058/149‑1 (MQ=255)                 cTTGCCGGTGGAAATCGGTGGCACCGAGAAAATGTCGAAGTCGAAAAACAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGt                                                                                                                               >  8:288785/1‑149 (MQ=255)                               tCGGTGGCACCGAGAAAATGTCGAAGTCGAAAAACAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTc                                                                                                                 <  3:285227/149‑1 (MQ=255)                                 ggaactggcccacgtcggtgctggcctgcttgatggcagcgtgaatggcgcggcggatgaccttttgcgcgtcgtccagggcggcaacatccagcttgcctggcaggccctggctg                                                                                                                                                 >  1:318906‑M1/116‑116 (MQ=255)                                 ggaactggcccacgtcggtgctggcctgcttgatggcagcgtgaatggcgcggcggatgaccttttgcgcgtcgtccagggcggcaacatccagcttgcctggcaggccctggctg                                                                                                                                                 <  2:318906‑M1/1‑1 (MQ=255)                                  gTGGCACCGAGAAAATGTCGAAGTCGAAAAACAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTcc                                                                                                                             <  6:122694/134‑1 (MQ=255)                                  gTGGCACCGAGAAAATGTCGAAGTCGAAAAACAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTcc                                                                                                                             >  5:122694/1‑134 (MQ=255)                                  gTGGCACCGAGAAAATGTCGAAGTCGAAAAACAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGaa                                                                                                              <  6:35847/149‑1 (MQ=255)                                   tGGCACCGAGAAAATGTCGAAGTCGAAAAACAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAg                                                                                                             <  1:179677/149‑1 (MQ=255)                                     gCACCGAGAAAATGTCGAAGTCGAAAAACAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGt                                                                                                           >  8:311237/1‑149 (MQ=255)                                       aCCGAGAAAATGTCGAAGTCGAAAAACAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGc                                                                                                         >  6:116398/1‑149 (MQ=255)                                                     gaagtcgaaAAACAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCg                                                                                                                   <  2:335130/125‑1 (MQ=255)                                                     gaagtcgaaAAACAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCg                                                                                                                   >  1:335130/1‑125 (MQ=255)                                                      tggcctgcttgatggcagcgtgaatggcgcggcggatgaccttttgcgcgtcgtccagggcggcaacatccagcttgcctggcaggccctggctGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑gc                                                                                          <  6:284830‑M1/55‑1 (MQ=255)                                                       ggcctgcttgatggcagcgtgaatggcgcggcggatgaccttttgcgcgtcgtccagggcggcaacatccagcttgcctggcaggccctggctGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑gcg                                                                                         <  5:161665‑M1/56‑1 (MQ=255)                                                              aaaCAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTgtct                                                                                 >  2:275873/1‑149 (MQ=255)                                                               aactacGGCGTCGACCCGCAGTCCATGCTCGAAGCCTTCTGCGCTGACTCCTTCCTCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTgtctg                                                                                <  8:162777/149‑1 (MQ=255)                                                               aacaacGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTgtctg                                                                                >  2:39131/1‑149 (MQ=255)                                                                 caacGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTgtctggc                                                                              <  7:102217/149‑1 (MQ=255)                                                                    cGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTgtctggcgtc                                                                           >  7:324023/1‑149 (MQ=255)                                                                       gcgtgaatggcgcggcggatgacctgttgcgcgtcgtccagggcggcaacatccagcttgcctggcaggccctggctGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTgtctggcgtctg                                                                         >  5:284830‑M1/78‑149 (MQ=255)                                                                               cGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCAGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTggctcaggc                                                                 >  1:301545/1‑148 (MQ=255)                                                                                      cATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCAGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCa                                                         >  8:282598/1‑149 (MQ=255)                                                                                        gatgaccttttgcgcgtcgtccagggcggcaacatccagcttgcctggcaggccctggctGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAg                                                        >  6:161665‑M1/61‑149 (MQ=255)                                                                                         gATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGc                                                       >  3:30582/1‑148 (MQ=255)                                                                                           tCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAg                                                    >  7:271922/1‑149 (MQ=255)                                                                                            cGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGCAGCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCACAGGCTCACGTCAGCCAg                                                    >  1:263395/1‑149 (MQ=255)                                                                                             gacgCCGACGGGGGCGACTCCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGTCATGAGCCTGGAATGGTGCTACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAgg                                                   <  4:202386/145‑1 (MQ=255)                                                                                              aaGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGc                                                 >  1:11731/1‑149 (MQ=255)                                                                                                gCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCt                                               <  8:271922/149‑1 (MQ=255)                                                                                                    aCGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCa                                           <  5:239160/149‑1 (MQ=255)                                                                                                     cGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAg                                          <  7:288785/149‑1 (MQ=255)                                                                                                                 cTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAgg                                                   <  1:216769/128‑1 (MQ=255)                                                                                                                 cTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAgg                                                   >  2:216769/1‑128 (MQ=255)                                                                                                                 cTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATg                              >  8:227708/1‑149 (MQ=255)                                                                                                                    ccgccTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATGt                             <  4:30582/147‑1 (MQ=255)                                                                                                                     gggcggTTCATGATGTTCCCCTCGCCGC‑CCGACATGAGCCTGGAATGGGCCGACTCGGGCGTCGAAGGTGCCAGCGGCTTCCTCGAGCCGTGTCTGGCGGCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATGTTg                           <  1:275873/144‑1 (MQ=255)                                                                                                                           ttCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATGTTGCCGCCCt                    >  3:85939/1‑149 (MQ=255)                                                                                                                             cATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATGTTGCCGCCCTg                   >  1:340827/1‑148 (MQ=255)                                                                                                                             cATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATGTTGCCGCCCTg                   <  2:301545/148‑1 (MQ=255)                                                                                                                              atgatgTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATGTTGCCGCCCTgg                  <  2:263395/148‑1 (MQ=255)                                                                                                                               tgatgTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCTTGTCTGGCGTCTGGCTCAGGCTCACGTCACCCAGGACCTGCCATGCAAACAGAATATTGCCGCCCTGga                 >  8:212159/1‑148 (MQ=255)                                                                                                                                gatgTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGc                                        >  1:227849/1‑124 (MQ=255)                                                                                                                                gatgTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGc                                        <  2:227849/124‑1 (MQ=255)                                                                                                                                 atgTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATGTTGCCGCCCTGgacga              >  3:1185/1‑149 (MQ=255)                                                                                                                                   gTTCGCCTCGCCGC‑CCCACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAACCTGGATGTTGCCGCCCTGGacgacg            >  7:146653/1‑149 (MQ=255)                                                                                                                                     tcgcctcgccGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATGTTGCCGCCCTGGACGAcgcg          >  8:23621/1‑149 (MQ=255)                                                                                                                                        cctcgccGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATGTTGCCGCCCTGGACGACGCGCa        >  6:72384/1‑148 (MQ=255)                                                                                                                                         ctcgccGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATGTTGCCGCCCTGGACGACGCGCaa       >  3:38041/1‑148 (MQ=255)                                                                                                                                            gccgc‑cCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATGTTGCCGCCCTGGACGACGCGCAAAAgg   <  7:311237/149‑1 (MQ=255)                                                                                                                                              cgc‑cCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATGTTGCCGCCCTGGACGACGCGCAAAAGGt  >  4:55527/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                GCCTGAAGACCGACGGCTTGCCGGTGGAAATCGGTGGCACCGAGAAAATGTCGAAGTCGAAAAACAACGGCGTCGACCCGCAGTCCATGATCGAAGCCTACGGCGCCGACACCTGCCGCCTGTTCATGATGTTCGCCTCGCCGC‑CCGACATGAGCCTGGAATGGTCCGACTCCGGCGTCGAAGGTGCCAGCCGCTTCCT‑GCGCCGTGTCTGGCGTCTGGCTCAGGCTCACGTCAGCCAGGGCCTGCCAGGCAAGCTGGATGTTGCCGCCCTGGACGACGCGCAAAAGGT  >  NC_002947/5458103‑5458391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.