New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5474944 = | 51 (0.940) | 5 (0.100) | 4/242 | NT | 11.2% | intergenic (‑150/‑156) | proA/PP_4812 | gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase |
? | NC_002947 | 5475014 = | 32 (0.640) | intergenic (‑220/‑86) | proA/PP_4812 | gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase |
GGTGTCTTGGCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAA > NC_002947/5474801‑5475090 | ggccttggccagggtctgggcgtcgcggtcgaaaaagctgtcgggcagggctggcatgcggggcagttcgtggctggagaggcggggatgatagcaatgaatggcttaatcgaggctgaattggacggtgatgttggcagtgcCGGccc < 8:235661‑M1/6‑1 (MQ=255) gtgtCTTGGCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCt > 3:310567/1‑149 (MQ=255) gtgtCTTGGCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCt > 3:227190/1‑149 (MQ=255) ccagggtctgggcgtcgcggtcgaaaatgctgtcgggcacggctggcaagcggggcagttcgtggctggagaggcggggatgatagcaatgaatggcttaatcgaggctgaattggacggtgaagttggcagtgcCGGCCCTTTAGCgg < 1:190356‑M1/14‑1 (MQ=255) gCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCAGCTCCTGTCGCGGCCCTTTAGCggg > 3:36898/1‑149 (MQ=255) aaGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGgcgc < 7:289094/149‑1 (MQ=255) aGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGgcgc > 1:55174/1‑148 (MQ=255) aGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGgcgc < 2:55174/148‑1 (MQ=255) aTCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTc < 2:303162/149‑1 (MQ=255) tCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTcc > 3:232888/1‑149 (MQ=255) gCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCAc < 5:302349/149‑1 (MQ=255) aTTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTgg < 5:58674/148‑1 (MQ=255) aTTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACCgg > 7:271152/1‑148 (MQ=255) ataACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGAtt > 1:180223/1‑149 (MQ=255) ataACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGAtt > 1:185795/1‑149 (MQ=255) aaaaagctgtcgggcagggctggcatgcggggcagtacgtggctggagaggcggggatgatagcaatgaatggcttaatcgaggctgaattggacggtgatgttggcagtgcCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGAtt < 1:55856‑M1/37‑1 (MQ=255) taACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGAttt < 1:79871/149‑1 (MQ=255) ccGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACCGGGATTTGTGTAg < 8:271152/149‑1 (MQ=255) gcgcAGGTGTACGCACAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATATCCATCTCCTGTCGCGGCCCTTTACCCAGCGCGCCCGCTCCAACTCGCATATGTGAAg > 4:325510/1‑147 (MQ=255) tgtACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGtt < 5:109505/149‑1 (MQ=255) tACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGttt < 2:185795/148‑1 (MQ=255) tACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGttt < 2:180223/148‑1 (MQ=255) cGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTAcc < 7:18970/149‑1 (MQ=255) gCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCggg > 8:170125/1‑106 (MQ=255) gCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCggg < 7:170125/106‑1 (MQ=255) cAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCcgc > 7:87056/1‑148 (MQ=255) atgcggggcagttcgtggctggagaggcggggatgatagcaatgaatggcttaatcgaggctgaattggacggtgatgttggcagtgcCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCcgc < 7:129872‑M1/60‑1 (MQ=255) gggTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGc > 2:18784/1‑149 (MQ=255) gcagttcgtggctggagaggcggggatgatagcaatgaatggcttaatcgaggctgaattggacggtgatgttggcagtgcCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGc > 2:55856‑M1/82‑149 (MQ=255) cagttcgtggctggagaggcggggatgatagcaatgaatggcttaatcgaggctgaattggacggtgatgttggcagtgcCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGcc > 8:129872‑M1/81‑149 (MQ=255) caggtcggggctggagaggcggggattatagcaatgaatggcttaatcgaggctgaattggacggtgatgttggcagtgcCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGcc > 4:72791‑M1/81‑149 (MQ=255) ggATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGc > 5:97916/1‑98 (MQ=255) ggATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGc < 6:97916/98‑1 (MQ=255) ggATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACt > 8:107416/1‑149 (MQ=255) gATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTg < 1:18784/149‑1 (MQ=255) aTGGTAGAAAATGGATGGTGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTg < 4:227190/148‑1 (MQ=255) gTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCaa < 4:209566/149‑1 (MQ=255) tAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGc > 3:239330/1‑136 (MQ=255) tAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGc < 4:239330/136‑1 (MQ=255) tAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAAc < 8:87056/149‑1 (MQ=255) gAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGtt < 8:184219/119‑1 (MQ=255) gAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGtt > 7:184219/1‑119 (MQ=255) aaaTGGATGGGGCACTTTGTAGGAAAGATGTAACCGGGGTTATCGAGAGTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCa < 4:36898/149‑1 (MQ=255) aaaTGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCa < 7:107416/149‑1 (MQ=255) atggatggGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCAcc < 4:173532/149‑1 (MQ=255) ggatggGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGt > 2:35358/1‑149 (MQ=255) gatggGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGt < 4:310567/148‑1 (MQ=255) gggCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAAt < 4:232888/149‑1 (MQ=255) cattgtgTAGGAAAGATGTACCCGGGGTTATGGAGATTTCCATCTCCTGTCGCGTCGCTTTAGCGGGCTCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCa < 3:325510/146‑1 (MQ=38) tgtgTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGcc > 2:116322/1‑149 (MQ=255) aaaGATGTAACCGGGGTTATCTAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGTCAACATCACCGTCCAATTCAGCCTCGATTaa < 1:35358/149‑1 (MQ=255) ggTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTa > 1:164331/1‑149 (MQ=255) aTCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAg > 7:214231/1‑67 (MQ=255) aTCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAg < 8:214231/67‑1 (MQ=255) agaTTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGcc < 2:276852/97‑1 (MQ=255) tttttCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTatcatc < 2:238989/143‑1 (MQ=255) gaTTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCaa < 8:59386/98‑1 (MQ=255) gaTTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTACCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATccag > 1:238989/1‑146 (MQ=255) gcgGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGaa < 2:164331/148‑1 (MQ=255) | GGTGTCTTGGCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAA > NC_002947/5474801‑5475090 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |