New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5474944 =	51 (0.940)	5 (0.100)	4/242	NT	11.2%	intergenic (‑150/‑156)	proA/PP_4812	gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase
	?	NC_002947	5475014 =	32 (0.640)					intergenic (‑220/‑86)	proA/PP_4812	gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase

GGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGCC  >  NC_002947/5474870‑5475156                                                                                                                                                 |                                                                                                                                               ggATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACt                                                                                                                                            >  8:107416/1‑149 (MQ=255)  gATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTg                                                                                                                                           <  1:18784/149‑1 (MQ=255)   aTGGTAGAAAATGGATGGTGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTg                                                                                                                                           <  4:227190/148‑1 (MQ=255)      gTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCaa                                                                                                                                       <  4:209566/149‑1 (MQ=255)       tAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAAc                                                                                                                                      <  8:87056/149‑1 (MQ=255)           aaaTGGATGGGGCACTTTGTAGGAAAGATGTAACCGGGGTTATCGAGAGTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCa                                                                                                                                  <  4:36898/149‑1 (MQ=255)           aaaTGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCa                                                                                                                                  <  7:107416/149‑1 (MQ=255)             atggatggGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCAcc                                                                                                                                <  4:173532/149‑1 (MQ=255)               ggatggGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGt                                                                                                                              >  2:35358/1‑149 (MQ=255)                gatggGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGt                                                                                                                              <  4:310567/148‑1 (MQ=255)                    gggCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAAt                                                                                                                         <  4:232888/149‑1 (MQ=255)                       cattgtgTAGGAAAGATGTACCCGGGGTTATGGAGATTTCCATCTCCTGTCGCGTCGCTTTAGCGGGCTCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCa                                                                                                                      <  3:325510/146‑1 (MQ=38)                          tgtgTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGcc                                                                                                                   >  2:116322/1‑149 (MQ=255)                                  aaaGATGTAACCGGGGTTATCTAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGTCAACATCACCGTCCAATTCAGCCTCGATTaa                                                                                                           <  1:35358/149‑1 (MQ=255)                                                ggTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTa                                                                                             >  1:164331/1‑149 (MQ=255)                                                        agaTTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGcc                                                                                                                                         <  2:276852/97‑1 (MQ=255)                                                         tttttCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTatcatc                                                                                        <  2:238989/143‑1 (MQ=255)                                                         gaTTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCaa                                                                                                                                       <  8:59386/98‑1 (MQ=255)                                                         gaTTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTACCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACAGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATccag                                                                                     >  1:238989/1‑146 (MQ=255)                                                                          gcgGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGaa                                                                    <  2:164331/148‑1 (MQ=255)                                                                            ggccctttcgcgggtaaacccgctcctacacaaatcccagtgggagcgggcgcgcccgctaaagggccgGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTg                                                                 >  8:129872‑M2/70‑149 (MQ=255)                                                                            ggccctttcgcgggtaaacccgctcctacacaaatcccagtgggagcgggcgcgcccgctaaagggccgGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATAATCCCCGCCTCTCCAGCCCCGACCTg                                                                 >  4:72791‑M2/70‑149 (MQ=255)                                                                             gccctttcgcgggtaaacccgctcctacacaaatcccagtgggagcgggcgcgcccgctaaagggccgGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGc                                                                >  2:55856‑M2/69‑149 (MQ=255)                                                                                  TTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCg                                                            <  3:78421‑M1/148‑1 (MQ=255)                                                                                     gcgggtaaacccgctcctacacaaatcccagtgggagcgggcgcgcccgctaaagggccgGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCAt                                                         <  7:129872‑M2/88‑1 (MQ=255)                                                                                      cGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATg                                                        <  4:78421/148‑1 (MQ=255)                                                                                         gcgcgcCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAg                                                    >  6:320918/1‑149 (MQ=255)                                                                                           gcgcCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGcc                                                  >  6:103486/1‑149 (MQ=255)                                                                                             gcCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCt                                                >  2:190493/1‑149 (MQ=255)                                                                                               ccGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGACAACATCACCGTCCAATTCAGAATCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCACCCACGAACTGCCCCGCATGCCAGCCCTGc                                              >  2:190356/1‑149 (MQ=255)                                                                                                     ccACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGa                                          >  7:267699/1‑147 (MQ=255)                                                                                                         tGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCAACGAACTGACCCGCATCCCAGCCCTGCCCGACAGCtt                                    >  6:346332/1‑149 (MQ=255)                                                                                                            aatcccagtgggagcgggcgcgcccgctaaagggccgGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGTACTGCCCCGCATGCCAGCCCTGCCCGACAGCttttt                                 <  1:55856‑M2/112‑1 (MQ=255)                                                                                                                 gtgtAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACa                                        <  7:149890/137‑1 (MQ=255)                                                                                                                 gtgtAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACa                                        >  8:149890/1‑137 (MQ=255)                                                                                                                    tAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACcgc                          >  1:337964/1‑148 (MQ=255)                                                                                                                       gAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGAc                                         >  4:336457/1‑130 (MQ=255)                                                                                                                       gAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGAc                                         <  3:336457/130‑1 (MQ=255)                                                                                                                              tttACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGAc               >  2:275914/1‑149 (MQ=255)                                                                                                                                   ccgctaaagggccgGCACTGCCAACTTCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCTTGCCAGCCGTGCCCGACAGCATTTTCGACCGCGACGCCCAGACCCTgg          <  1:190356‑M2/135‑1 (MQ=255)                                                                                                                                   ccGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTgg          >  5:327349/1‑149 (MQ=255)                                                                                                                                   ccGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTgg          >  8:262826/1‑149 (MQ=255)                                                                                                                                    cgcgAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTc                                <  5:93677/126‑1 (MQ=255)                                                                                                                                    cgcgAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTc                                >  6:93677/1‑126 (MQ=255)                                                                                                                                     gcgAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGc         >  7:235661/1‑148 (MQ=255)                                                                                                                                           gggccgGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGcc  <  8:235661‑M2/143‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                               GGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTAGCGGGCGCGCCCGCTCCCACTGGGATTTGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGCC  >  NC_002947/5474870‑5475156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.