New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2658287	46 (0.850)	4 (0.080)	4/248	NT	8.1%	coding (514/981 nt)	PP_2330	hypothetical protein
	?	NC_002947	= 2658316	47 (0.910)					coding (485/981 nt)	PP_2330	hypothetical protein

CGCCGGTGGCCAGGTCGACACCCACACCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTACAGCCCAGTGAGGATGCTGGAAATCTGGTGCTCGATTTCCTCATGGCTG  >  NC_002947/2658188‑2658459                                                                                                                                 |                                                                                                                                                cGCCGGTGGCCAGGTCGACACCCACACCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCAGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCt                                                                                                                              >  7:215185/1‑148 (MQ=255)    cGGTGGCCAGGTCGACACCCACACCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATg                                                                                                                          >  8:244354/1‑149 (MQ=255)    cGGTGGCCAGGTCGACACCCACACCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATg                                                                                                                          <  3:225530/149‑1 (MQ=255)         gCCAGGTCGACACCCACTCGGATGGCGGGCTTGTGCAGGTTGGCCTTGCCGCGGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTTCCGGGTAGCCCATGAGCTATATGATGCGGATGTCAGGTACACCTTCGTAGCTGATGCTCtt                                                                                                                     <  7:4145/149‑1 (MQ=255)           cAGGTCGACACCCACACCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTg                                                                                                                    >  7:19874/1‑148 (MQ=255)           cAGGTCGACACCCACACCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGa                                                                                                                   <  4:279127/149‑1 (MQ=255)                 gACACCCACACCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCt                                                                                                             <  8:19874/149‑1 (MQ=255)                  acacCCACACCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTg                                                                                                            <  7:244354/149‑1 (MQ=255)                      ccACACCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGctc                                                                                                                       <  6:17610/134‑1 (MQ=255)                      ccACACCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGctc                                                                                                                       >  5:17610/1‑134 (MQ=255)                      ccACACCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGt                                                                                                          >  8:163923/1‑147 (MQ=255)                      ccACACCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGt                                                                                                          <  7:163923/147‑1 (MQ=255)                      ccACACCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTcc                                                                                                        >  1:112969/1‑149 (MQ=255)                       cacaCCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGctct                                                                                                                      <  3:103233/134‑1 (MQ=255)                       cacaCCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGctct                                                                                                                      >  4:103233/1‑134 (MQ=255)                       cacaCCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCg                                                                                                       <  6:296413/149‑1 (MQ=255)                       cacaCCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCg                                                                                                       <  8:288144/149‑1 (MQ=255)                        acacCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCgg                                                                                                      <  2:112969/149‑1 (MQ=255)                          acCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGTTGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCgggg                                                                                                    >  5:186568/1‑149 (MQ=255)                            cGATGGCGCCCTGGTGCCGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGt                                                                                                   >  6:279030/1‑148 (MQ=255)                                    cccTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTa                                                                                          <  2:182861/149‑1 (MQ=255)                                         gTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGTCATGCGCAGCATGGCCATTACC‑GGTAGCCCTTCAGCACGATGATGCGGTTGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGGCCGGGGTCACGCGGTACTCGa                                                                                     <  6:248559/148‑1 (MQ=255)                                               gTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAgcg                                                                               >  2:116331/1‑149 (MQ=255)                                                    ccTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGcgcgg                                                                          >  5:321395/1‑149 (MQ=255)                                                       tGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGGACGATGATGCGGATGTCCGGTACGCCTTCGTTGCTGATGCTCTTGAATATCTGGTCCGGGGTCCGGCGGTACTCGATCAGCGcgcggtcg                                                                       >  1:343709/1‑149 (MQ=255)                                                            ccgGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTg                                                                  >  2:26102/1‑149 (MQ=255)                                                                 cTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCCTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCccgc                                                             >  2:39176/1‑149 (MQ=255)                                                                  tGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCccgcc                                                            >  7:92512/1‑149 (MQ=255)                                                                    gCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCccgccg                                                           <  1:39176/148‑1 (MQ=255)                                                                        gTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAgg                                                        >  1:46284/1‑147 (MQ=255)                                                                             cAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTACa                                                 <  1:116331/149‑1 (MQ=255)                                                                                 cgcAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACt                                                                                        <  8:91434/106‑1 (MQ=255)                                                                                       aTGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTACAGCCCAGTGAg                                       >  3:225619/1‑149 (MQ=255)                                                                                        tGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTccggtaatggccatgctgcgcctgccgacccgccagtccggcggcaaggccaacctgcaccagggcgccatcggtgtgggtgtcgacctggccaccggcgtgaccct                                      <  6:288878‑M2/149‑108 (MQ=255)                                                                                           ccATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTccggtaatggccatgctgcgcctgccgacccgccagtccggcggcaaggccaacctgcaccagggcgccatcggtgtgggtgtcgacctg                                                       >  1:58244‑M2/1‑39 (MQ=255)                                                                                           ccATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTccggtaatggccatgctgcgcctgccgacccgccagtccggcggcaaggccaacctgcaccagggcgccatcggtgtgggtgtcgacctg                                                       <  2:58244‑M2/129‑91 (MQ=255)                                                                                            cATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTTATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTACAGCCCAGTGAGGATGc                                  >  7:124301/1‑149 (MQ=255)                                                                                             aTTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTGCACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTTCAGCCCAGTGAGGATGCt                                 >  3:60307/1‑149 (MQ=255)                                                                                              ttACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTACAGCCCAGTGAGGATGCTg                                <  5:279030/149‑1 (MQ=255)                                                                                                aCCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTACAGCCCAGTGAGGATGCTgg                               <  8:92512/148‑1 (MQ=255)                                                                                                   gggTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGa                                                      <  3:300447/122‑1 (MQ=255)                                                                                                   gggTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGa                                                      >  4:300447/1‑122 (MQ=255)                                                                                                      tAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTACAGCCCAGTGAGGATGCTGGAAATCTg                        <  6:321395/149‑1 (MQ=255)                                                                                                       aGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTACAGCCCAGTGAGGATGCTGGaaagcggg                       >  4:262568/1‑144 (MQ=255)                                                                                                        gCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTCATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTACAGCCCAGTGAGGATGCTGGAAATCTGGt                      <  8:124301/149‑1 (MQ=255)                                                                                                          ccATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTACAGCCCAGTGAGGATGCTGGAAATCTGGTGc                    >  3:35125/1‑149 (MQ=255)                                                                                                            aTCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTACAGCCCAGTGAGGATGCTGGAAATCTGGTGCTc                  >  7:251692/1‑149 (MQ=255)                                                                                                               aGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTACAGCCCAGTGAGGATGCTGGAAATCTGGTGCTCGAt               <  4:35125/149‑1 (MQ=255)                                                                                                                gCACGATGATGCGGATGTccggtaatggccatgctgcgcctgccgacccgccagtccggcggcaaggccaacctgcaccagggcgccatcggtgtgggtgtcgacctggccaccggcgtgaccctgcgcggcacctggctgaacaacat              >  5:288878‑M2/1‑18 (MQ=255)                                                                                                                        atgCGGATGTCCGGTGCACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTTCAGCCCAGTGAGGATGCTGGAAATCTGGTGCTCGATTTCCTCAt       <  4:60307/148‑1 (MQ=255)                                                                                                                            ggATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTACAGCCCAGTGAGGATGCTGGAAATCTGGTGCTCGATTTCCTCATGGCtg  <  1:26102/149‑1 (MQ=255)                                                                                                                                 |                                                                                                                                                CGCCGGTGGCCAGGTCGACACCCACACCGATGGCGCCCTGGTGCAGGTTGGCCTTGCCGCCGGACTGGCGGGTCGGCAGGCGCAGCATGGCCATTACCGGGTAGCCCATCAGCACGATGATGCGGATGTCCGGTACACCTTCGTAGCTGATGCTCTTGAATATCTGGTCCGGGGTCACGCGGTACTCGATCAGCGCGCGGTCGCGGTGCCCGCCGAGGGAGTACAGCCCAGTGAGGATGCTGGAAATCTGGTGCTCGATTTCCTCATGGCTG  >  NC_002947/2658188‑2658459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.