New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2855059 =	39 (0.720)	3 (0.060)	3/250	NT	7.8%	intergenic (+109/+63)	PP_2507/PP_5532	short‑chain dehydrogenase/reductase family oxidoreductase/hypothetical protein
	?	NC_002947	2855106 =	33 (0.630)					intergenic (+156/+16)	PP_2507/PP_5532	short‑chain dehydrogenase/reductase family oxidoreductase/hypothetical protein

ACCGGAGCCTTTGCGTGAGGGTTCGGCTTTGATGTCTCAGTCGATGGAACTGAATCTTGGACCGCGTCCAGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGTCCTCCATCAATCCATCCAGAGTCATGTCCCGTGCATAGCCCAT  >  NC_002947/2854960‑2855253                                                                                                                                                   |                                                                                                                                                     ctcagttgatctgggcttcgcactacctttgcacgttagccaaggcactgatggatgatgctgaactgggcatgatgcgctgaatgactcatcatcgacTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTc                                                                                                                                                    >  6:341052‑M1/100‑149 (MQ=255)   aggAGACTTTGCGTGAGGGTTCGGCTTTGATGTCTCAGTCGATGGAACTGAATCTTGGACCGCGTCCAGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCga                                                                                                                                                  <  8:277269/148‑1 (MQ=255)    agttgatctgggcttcgcactacctttgcacgttagccaaggcactgatggatgatgctgaactcggcatgatgcgctgaatgactcatcatcgacTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCgat                                                                                                                                                 >  3:314583‑M1/97‑149 (MQ=255)     gttgatctgggcttcgcactacctttgcacgttagccaaggcactgatggatgatgctgaactgggcatgatgcgctgaatgactcatcatcgacTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCgat                                                                                                                                                 <  4:314583‑M1/53‑1 (MQ=255)         cTTTGCGTGAGGGTTCGGCTTTGATGTCTCAGTCGATGGAACTGAATCTTGGACCGCGTCCAGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGAtgatga                                                                                                                                            <  8:280413/149‑1 (MQ=255)         cTTTGCGTGAGGGTTCGGCTTTGATGTCTCAGTCGATGGAACTGAATCTTGGACCGCGTCCAGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGAtgatga                                                                                                                                            <  2:192088/149‑1 (MQ=255)         cTTTGAGTGATGGTTCGGCTTTGATGGCTAAGTCGATGGAACTGAATCTTGGACCGCGTCCAGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGAtgatga                                                                                                                                            <  7:137739/149‑1 (MQ=255)                                   tctcAGTCGATGGAACTGAATCTTGGACCGCGTCCAGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGtt                                                                                                                   >  3:308334/1‑148 (MQ=255)                                                 aCTGAATCTTGGACCGCGTCCAGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGACCAGTTCAGCATcatccat                                                                                                      >  2:111033/1‑147 (MQ=255)                                                    gAATCTTGGACCGCGTCCAGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGcatcat                                                                                                          <  1:242929/140‑1 (MQ=255)                                                    gAATCTTGGACCGCGTCCAGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGcatcat                                                                                                          >  2:242929/1‑140 (MQ=255)                                                     aaTCTTGGACCGCGTCCAGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCa                                                                                                                                    <  8:132250/113‑1 (MQ=255)                                                     aaTCTTGGACCGCGTCCAGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCa                                                                                                                                    >  7:132250/1‑113 (MQ=255)                                                     aaTCTTGGACCGCGTCCAGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGc                                                                                                >  2:256150/1‑149 (MQ=255)                                                                  gTCCAGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTg                                                                                   <  4:150807/149‑1 (MQ=255)                                                                      aGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCa                                                                                 >  4:284117/1‑147 (MQ=255)                                                                       gCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTgg                                                                                           <  3:112608/136‑1 (MQ=255)                                                                       gCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTgg                                                                                           >  4:112608/1‑136 (MQ=255)                                                                         gagaAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATTAGTGCCTTGGCTAACGTGCAAAgg                                                                             <  7:210136/148‑1 (MQ=255)                                                                            aaaaGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGt                                                                         <  4:308334/149‑1 (MQ=255)                                                                             aaaGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTg                                                                        <  3:284117/149‑1 (MQ=255)                                                                              aaGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTAAGCATCATCCCTCAGTGCCTTGGCTAACGTGCAAAGGTAGTGc                                                                       >  3:201408/1‑149 (MQ=255)                                                                                          gCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCaaa                                                                               <  8:307639/129‑1 (MQ=255)                                                                                          gCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCaaa                                                                               >  7:307639/1‑129 (MQ=255)                                                                                          gCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTCGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGAt                                                            >  6:1805/1‑148 (MQ=255)                                                                                              ggTCGTTGGGGCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAAc                                                        <  2:109320/148‑1 (MQ=255)                                                                                              atcgactgggtgccttcaagacctatgcgtctcccgattttgaaggcgacccaGTCGATGATGAGTCATTCAGCGCATCATGCCGAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACt                                                       >  3:314583‑M2/54‑149 (MQ=255)                                                                                              atcgactgggtgccttcaagacctatgcgtctcccgattttgaaggcgacccaGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAAc                                                        <  4:314583‑M2/95‑1 (MQ=255)                                                                                               gTCGTTAGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTg                                                                        <  1:142904/131‑1 (MQ=255)                                                                                               gTCGTTAGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTg                                                                        >  2:142904/1‑131 (MQ=255)                                                                                                tCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTCGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGa                                                     <  5:1805/149‑1 (MQ=255)                                                                                                 gactgggtgccttcaagacctatgcgtctcccgattttgaaggcgacccaGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAg                                                    >  6:341052‑M2/51‑149 (MQ=255)                                                                                                       GTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGt                                             <  6:306350‑M1/149‑1 (MQ=255)                                                                                                        TCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGTc                                            >  4:99588‑M1/1‑149 (MQ=255)                                                                                                        TCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTAAGCATCATCCATCAGTGCCTTGGCTAACTTGCAAAGGTAGTGCGAAGCCAAGATCAACTGAGGTt‑tgac                                            <  8:120958‑M1/149‑3 (MQ=255)                                                                                                           ccTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGtcctc                                         <  8:115389/149‑1 (MQ=255)                                                                                                             ttCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGTCCTCCa                                       >  8:251325/1‑149 (MQ=255)                                                                                                                  aaTCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGTCCTCCATCAat                                  <  1:256150/149‑1 (MQ=255)                                                                                                                               aTAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑Tg                                              <  2:66385/124‑1 (MQ=255)                                                                                                                               aTAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑Tg                                              >  1:66385/1‑124 (MQ=255)                                                                                                                                tAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGTCCTCCATCAATCCATCCAGAGTCAt                    <  7:120958/149‑1 (MQ=255)                                                                                                                                   gTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGTCCTCCATCAat                                  <  5:293295/132‑1 (MQ=255)                                                                                                                                   gTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGTCCTCCATCAat                                  >  6:293295/1‑132 (MQ=255)                                                                                                                                        atcttcACCCAGTCGATGATGAGTCAATCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTTATGTCCTCCATCAATCCATCCAGAGTCATGTCCCGt             <  1:50893/144‑1 (MQ=255)                                                                                                                                            gCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGTCCTCCATCAATCCATCCAGAGTCATGTCCCGTGCa          >  1:320791/1‑147 (MQ=255)                                                                                                                                             cACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGTCCTCCATCAATCCATCCAGAGTCATGTCCCGt             >  2:50893/1‑143 (MQ=255)                                                                                                                                               cccaGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGTCCTCCATCAATCCATCCAGAGTCATGTCCCGTGCATAGcc     >  4:137001‑M2/5‑149 (MQ=255)                                                                                                                                                ccaGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGTCCTCCATCAATCCATCCAGAGTCATGTCCCGTGCATAGcc     >  3:164051‑M2/4‑148 (MQ=255)                                                                                                                                                 caGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGAGAAGCCCAGATCAACTGAGTTT‑TGTCATCCATCAATCCATCCAGAGTCATGTCCCGTGCAAAGCCCa   >  3:301929‑M2/3‑149 (MQ=255)                                                                                                                                                  aGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGTCCTCCATCAATCCATCCAGAGTCATGTCCCGTGCATAGCCCAt  <  2:320791‑M2/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     ACCGGAGCCTTTGCGTGAGGGTTCGGCTTTGATGTCTCAGTCGATGGAACTGAATCTTGGACCGCGTCCAGCGAGAAAAGAGGCAAGGGGCTAGGTCGTTGGGTCGCCTTCAAAATCGGGAGACGCATAGGTCTTGAAGGCACCCAGTCGATGATGAGTCATTCAGCGCATCATGCCCAGTTCAGCATCATCCATCAGTGCCTTGGCTAACGTGCAAAGGTAGTGCGAAGCCCAGATCAACTGAGGTT‑TGTCCTCCATCAATCCATCCAGAGTCATGTCCCGTGCATAGCCCAT  >  NC_002947/2854960‑2855253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.