New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5873510 =	45 (0.830)	4 (0.080)	4/246	NT	8.3%	coding (215/657 nt)	PP_5147	haloacid dehalogenase‑like family hydrolase
	?	NC_002947	5873556 =	46 (0.900)					coding (261/657 nt)	PP_5147	haloacid dehalogenase‑like family hydrolase

CGCAACGACAGCTTCTACCAGGATTACCTCAATGGCACCCTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGATCGCCCGGCGCCTGGGGGTGCGGGTGTTGCTGGCAACCGAATG  >  NC_002947/5873410‑5873699                                                                                                                                                    |                                                                                                                                                 tcggtgcggtgacgaagcggttggtagcggtgatgatcaccagctggtcgcccgcctcgcggtgctgctgcagcaaggccagggccttgggcaggacgatgGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCa                                                                                                                                                 >  1:139465‑M1/102‑149 (MQ=255)   caacgACAGCTTCTACCAGGATTACCTCAATGGCACCCTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGCGCCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCAGCGAGCCCATc                                                                                                                                               <  1:85342/149‑1 (MQ=255)                  ccAGGATTACCTCAATGGCACCCTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGccc                                                                                                                               >  8:226682/1‑149 (MQ=255)                    aGGATTACCTCAATGGCACCCTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTg                                                                                                                             <  7:226682/149‑1 (MQ=255)                       aTTACCTCAATGGCACCCTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGc‑c                                                                                                                         <  8:184262/149‑1 (MQ=255)                        ttACCTCAATGGCACCCTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑Ct                                                                                                                        <  1:252678/149‑1 (MQ=255)                           ccTCAATGGCACCCTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTTCTGCCCAAGGCCAGGGC‑CTtgg                                                                                                                     <  7:260211/149‑2 (MQ=255)                           ccTAAATGGCACCCTGGACCTGCCGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTtg                                                                                                                      <  3:39854/148‑1 (MQ=255)                             tCAATGGCACCCTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTtgctg                                                                                                                   >  1:45343/1‑149 (MQ=255)                             tCAATGGCACCCTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTtgctg                                                                                                                   >  2:323031/1‑149 (MQ=255)                              cAATGGCACCCTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTtgctgc                                                                                                                  <  7:173257/149‑1 (MQ=255)                               aaTGGCACCCTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTgca                                                                                                                 <  7:310147/149‑1 (MQ=255)                                    cACCCTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTgcagcag                                                                                                             >  8:122819/1‑148 (MQ=255)                                       ccTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCAcc                                                                                                         >  7:147809/1‑149 (MQ=255)                                       ccTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCACTCGTCCTGCCCAAGGCCCTGGC‑CTTGCTgcagcagcaac                                                                                                         >  8:269290/1‑147 (MQ=255)                                                 cAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAggcggg                                                                                               <  7:271415/149‑1 (MQ=255)                                                    gCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGa                                                                                            >  1:39405/1‑149 (MQ=255)                                                     ccTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGAc                                                                                           <  7:269290/149‑1 (MQ=255)                                                          cTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCt                                                                                      >  6:298578/1‑149 (MQ=255)                                                           tGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTg                                                                                     >  4:152691/1‑149 (MQ=255)                                                           tGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCAGGGC‑CTtgggcag                                                                                                                 <  5:50080/121‑6 (MQ=255)                                                             gCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCTCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTgg                                                                                    <  1:84437/148‑1 (MQ=255)                                                                     cATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGAtcatca                                                                           <  1:323031/149‑1 (MQ=255)                                                                      aTGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCAc                                                                          >  3:287390/1‑149 (MQ=255)                                                                      aTGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCAc                                                                          >  7:18066/1‑149 (MQ=255)                                                                          agaTCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGatc                                                                               >  3:286574/1‑140 (MQ=255)                                                                          agaTCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGatc                                                                               <  4:286574/140‑1 (MQ=255)                                                                            aTCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTAc                                                                    <  8:147809/149‑1 (MQ=255)                                                                              ccTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTAcc                                                                   >  8:243536/1‑148 (MQ=255)                                                                                tGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAAc                                                                >  8:220903/1‑149 (MQ=255)                                                                                          acCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTAc                                                                    <  7:65779/135‑1 (MQ=255)                                                                                          acCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTAc                                                                    >  8:65779/1‑135 (MQ=255)                                                                                          acCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTca                                                      >  5:23467/1‑149 (MQ=255)                                                                                           cccATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGTTCATCACCGCTACCAACCGCTTCGTcac                                                     >  3:220888/1‑149 (MQ=255)                                                                                            ccATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCCCCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTcacc                                                    >  5:3794/1‑149 (MQ=255)                                                                                             cATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTcaccg                                                   >  1:327307/1‑149 (MQ=255)                                                                                             cATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCACATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTcaccg                                                   >  1:262523/1‑149 (MQ=255)                                                                                                 gC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTcaccgcac                                                <  2:45343/148‑1 (MQ=255)                                                                                                 gC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTCCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTcaccgcac                                                <  5:298578/148‑1 (MQ=255)                                                                                                    tgggctcgatgcagtcgcgcatgaagtcgcggtgccactcgtcgagccCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGa                                             >  1:139465‑M2/49‑149 (MQ=255)                                                                                                    ccGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCCTCACCGCTACCAACCGCTTCGTCACCGCACCGa                                             >  8:253972/1‑149 (MQ=255)                                                                                                    ccGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGa                                             <  1:327636/149‑1 (MQ=255)                                                                                                       gctcgatgcagtcgcgcatgaagtcgcggtgccactcgtcgagccCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAggcgggc                                                                                              <  6:265414‑M2/52‑1 (MQ=255)                                                                                                       gctcgatgcagtcgcgcatgaagtcgcggtgccactcgtcgagccCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAggcgggc                                                                                              >  5:265414‑M2/46‑97 (MQ=255)                                                                                                         TCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGATCGcc                                        <  4:93711‑M1/149‑1 (MQ=255)                                                                                                            ACGAGTGGCAGCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGATCGCCCgg                                     >  6:23467‑M1/1‑149 (MQ=255)                                                                                                            ACGAGTGGCACCGCGCCTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGATCGCCCgg                                     <  1:321217‑M1/149‑1 (MQ=255)                                                                                                               aGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGATCGCCCGgcgc                                  <  5:78831/149‑1 (MQ=255)                                                                                                                       cgcgACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGATCGCCCGGCGCCTg                               <  6:211456/144‑1 (MQ=255)                                                                                                                       cgcgACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGATCGCCCGGCGCCTg                               >  5:211456/1‑144 (MQ=255)                                                                                                                           aagtcgcggtgccactcgtcgagccCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGATCGCCCGGCGCCTGGGGGTGCgg                      <  2:139465‑M2/124‑1 (MQ=255)                                                                                                                           aCTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGATCGCCCGGCGCCTGGGGGTGCgg                      <  8:18066/149‑1 (MQ=255)                                                                                                                             ttCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGCGATTGCTGCAGCAGAACCGCGAGGCGGGCGACCAGCTGGTGATAAACACCGCAACCACCCGATGCGACACCCCCCCGATCGCCCGGCGCCTGGGGGTCCggg                     >  1:249340/1‑149 (MQ=255)                                                                                                                                aTGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGATCGCCCGGCGCCTGGGGGTGCGGGTGtt                 >  2:82985/1‑149 (MQ=255)                                                                                                                                       aCTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGATCGCCCGGCGCCTGGGGGTGCGGGTGTTGCTGGCa          <  3:152691/149‑1 (MQ=255)                                                                                                                                               gagccCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGATCGCCCGGCGCCTGGGGGTGCGGGTGTTGCTGGCAACCGAAt   <  2:321217‑M2/143‑1 (MQ=255)                                                                                                                                               gagccCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGATCGCCCGGCGCCTGGGGGTGCGGGTGTTGCTGGCAACCGAATg  <  4:220888‑M2/144‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 CGCAACGACAGCTTCTACCAGGATTACCTCAATGGCACCCTGGACCTGCAGGCCTACCTGGCCTTTTCCATGGAGATCCTGGCGGCAACACCCATGGC‑CCGGCTCGACGAGTGGCACCGCGACTTCATGCGCGACTGCATCGAGCCCATCGTCCTGCCCAAGGCCCTGGC‑CTTGCTGCAGCAGCACCGCGAGGCGGGCGACCAGCTGGTGATCATCACCGCTACCAACCGCTTCGTCACCGCACCGATCGCCCGGCGCCTGGGGGTGCGGGTGTTGCTGGCAACCGAATG  >  NC_002947/5873410‑5873699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.