| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 319208 = | 48 (0.750) | 4 (0.060) | 4/246 | NT | 7.7% | coding (534/1815 nt) | PP_0264 | sensor histidine kinase |
| ? | NC_002947 | 319244 = | 49 (0.790) | coding (498/1815 nt) | PP_0264 | sensor histidine kinase | |||||
CAGCTTCGTCGGCCGAAACTTCGCCTTCCGCCCTTACTTCAACGAAGCCATGGCCGGCCACCTTGGCCGCTTCTTCGGCCAGGGCACCACCTCGGCCAAGCGCGGCTACTTCTTTGCCGCGGCCGTGCGCGACCGCGAGCGGATCGTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/319358‑319208‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCGGCCGACGAAGCTGTCGTGCTTGTCCCAGTTCGAGGCGGCCAAGGT > NC_002947/319244‑319390 CAGCTTCGTCGGCCGAAACTTCGCCTTCCGCCCTTACTTCAACGAAGCCATGGCCGGCCACCTTGGCCGCTTCTTCGGCCAGGGCACCACCTCGGCCAAGCGCGGCTACTTCTTTGCCGCGGCCGTGCGCGACCGCGAGCGGATCGTCG > 5:406825/1‑149 TTACTTCAACGAAGCCATGGCCGGCCACCTTGGCCGCTTCTTCGGCCAGGGCACCACCTCGGCCAAGCGCGGCTACTTCTTTGCCGCGGCCGTGCGCGACCGCGAGCGGATCGTC > 7:158778/1‑115 TTACTTCAACGAAGCCATGGCCGGCCACCTTGGCCGCTTCTTCGGCCAGGGCACCACCTCGGCCAAGCGCGGCTACTTCTTTGCCGCGGCCGTGCGCGACCGCGAGCGGATCGTC < 8:158778/115‑1 CTTCTTTGCCGCGGCCGTGCGCGACCGAGAGCGGATCGTCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCGGCC > 5:356484/1‑148 CTTTGCCGCGGCCGTGCGCGACCGCGAGCGGATCGTCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTC > 5:114432/1‑141 CTTTGCCGCGGCCGTGCGCGACCGCGAGCGGATCGTCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTC < 6:114432/141‑1 CGTGCGCGACCGCGAGCGGATCGTCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCGGCCGACGAAGCTGTCGTGC < 6:356484/149‑1 CGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCGGCCGACGAAGCTGTCGTGCTTGTCCCAGTTCGAGGCGGCCAAG < 4:67413/149‑1 CGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCGGCCGACGAAGCTGTCGTGCTTGTCCCAGTTCGAGGCGGCCAAG < 8:255627/149‑1 GCAAAGTAGTAGCCGCGCTTGGCCGAGGTGGTGCCGTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCGGCCGACGAAGCTGTCGTGCTTGTCCCAGTTCGAGGCGGCCAAGGT < 4:169704/149‑1 CAGCTTCGTCGGCCGAAACTTCGCCTTCCGCCCTTACTTCAACGAAGCCATGGCCGGCCACCTTGGCCGCTTCTTCGGCCAGGGCACCACCTCGGCCAAGCGCGGCTACTTCTTTGCCGCGGCCGTGCGCGACCGCGAGCGGATCGTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/319358‑319208‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCGGCCGACGAAGCTGTCGTGCTTGTCCCAGTTCGAGGCGGCCAAGGT > NC_002947/319244‑319390 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |