New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 319208 = | 48 (0.750) | 4 (0.060) | 4/246 | NT | 7.7% | coding (534/1815 nt) | PP_0264 | sensor histidine kinase |
? | NC_002947 | 319244 = | 49 (0.790) | coding (498/1815 nt) | PP_0264 | sensor histidine kinase |
GTCGGTCAGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCGGCCGACGAA > NC_002947/319061‑319354 | accttggccgcctcgaactgggacaagcacgacagcttcgtcggccgaaacttcgccttccgcccttacttcaacgaagccatggccggccaccttggccgcttcttcggccacggcaccacctcggccaagcgcggctactactttGc < 4:169704‑M1/2‑1 (MQ=255) cttggccgcctcgaactgggacaagcacgacagcttcgtcggccgaaacttcgccttccgcccttacttcaacgaagccatggccggccaccttggccgcttcttcggccagggcaccacctcggccaagcgcggctacttctttGCcg < 8:255627‑M1/4‑1 (MQ=255) cttggccgcctcgaactgggacaagcacgacagcttcgtcggccgaaacttcgccttccgcccttacttcaacgaagccatggccggccaccttggccgcttcttcggccagggcaccacctcggccaagcgcggctacttctttGCcg < 4:67413‑M1/4‑1 (MQ=255) ggTCAGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCcga < 2:147939/149‑1 (MQ=255) gTCAGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCcgac < 6:83954/149‑1 (MQ=255) gTCAGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCcgac > 5:363483/1‑149 (MQ=255) gTCAGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCcgac > 5:83954/1‑149 (MQ=255) aGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCcgacga < 5:125637/148‑1 (MQ=255) aGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGAC‑TTGACCACCAGCACGCCGACGATc < 7:177211/149‑1 (MQ=255) gTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCg > 8:164049/1‑149 (MQ=255) cACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTcg > 5:142992/1‑149 (MQ=255) gcacgacagcttcgtcggccgaaacttcgccttccgcccttacttcaacgaagccatggccggccaccttggccgcttcttcggccagggcaccacctcggccaagcgcggctacttctttGCCGACGATCCGCTCGCGGTCGCGCACg < 6:356484‑M1/28‑1 (MQ=255) gggCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCa > 7:299414/1‑148 (MQ=255) gcgAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATc > 2:280275/1‑116 (MQ=255) ggccgaaacttcgccttccgcccttacttcaacgaagccatggccggccaccttggccgcttcttcggccagggcaccacctcggccaagcgcggctacttctttGCCGACGATCCGCTCTCGGTCGCGCACGGCCGCGGCAaagaag > 5:356484‑M1/106‑148 (MQ=255) gaaacttcgccttccgcccttacttcaacgaagccatggccggccaccttggccgcttcttcggccagggcaccacctcggccaagcgcggctacttctttGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAaag < 6:114432‑M1/40‑1 (MQ=255) gaaacttcgccttccgcccttacttcaacgaagccatggccggccaccttggccgcttcttcggccagggcaccacctcggccaagcgcggctacttctttGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAaag > 5:114432‑M1/102‑141 (MQ=255) gATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCt > 3:81394/1‑149 (MQ=255) tGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTg < 7:164049/149‑1 (MQ=255) cACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGcc > 3:199347/1‑148 (MQ=255) cACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGcc > 3:181791/1‑148 (MQ=255) cACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCg < 6:142992/149‑1 (MQ=255) cATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAggtg > 4:160566/1‑149 (MQ=255) gtgATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGgtggtg < 3:160566/148‑1 (MQ=255) aTCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAgg > 6:231669/1‑140 (MQ=255) aTCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAgg < 5:231669/140‑1 (MQ=255) ggTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTgg < 8:76373/148‑1 (MQ=255) gTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGcc > 3:182205/1‑149 (MQ=255) ctgctCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGCTCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGGGGTGCCCTGGCCGAAGAAGCGGc > 8:12299/1‑149 (MQ=255) ctCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCaa < 4:199347/149‑1 (MQ=255) gggCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGt < 4:182205/149‑1 (MQ=255) ggCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCgaa < 1:359754/127‑1 (MQ=255) ggCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCgaa > 2:359754/1‑127 (MQ=255) ggCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTggccggc > 5:296453/1‑148 (MQ=255) ggCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTggccggc > 3:302447/1‑148 (MQ=255) ccACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTg > 6:46415/1‑100 (MQ=255) ccACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTg < 5:46415/100‑1 (MQ=255) ccACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATgg > 6:406825/1‑149 (MQ=255) aGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTc > 4:95599/1‑149 (MQ=255) ggTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAg > 1:174711/1‑148 (MQ=255) gtgtGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGaa < 3:186629/146‑1 (MQ=255) gtgtGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGaa > 4:186629/1‑146 (MQ=255) tgtgGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTaa < 3:95599/149‑1 (MQ=255) tgGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGGGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCg > 1:288249/1‑138 (MQ=255) tgGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCg < 2:288249/138‑1 (MQ=255) tgGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAgg < 4:81394/149‑1 (MQ=255) tgGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAgg < 2:174711/149‑1 (MQ=255) tCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCg > 3:169704/1‑149 (MQ=255) gaTCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAg > 3:67413/1‑149 (MQ=255) aCTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGaa < 4:181791/149‑1 (MQ=255) cTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAg > 3:298164/1‑149 (MQ=255) accaccAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCg < 6:296453/149‑1 (MQ=255) ccaccaGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCgg > 7:158578/1‑149 (MQ=255) ccaccaGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCgg > 5:145098/1‑149 (MQ=255) caccaGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCGGc > 5:220814/1‑149 (MQ=255) accaGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCGGcc > 5:263125/1‑149 (MQ=255) aCGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCGGCcgacg > 1:46994/1‑147 (MQ=255) aCGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCGGCCGACGaa < 6:363483/149‑1 (MQ=255) | GTCGGTCAGCGTGCGGGTAGCACGGAAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGGCAAAGAAGTAGCCGCGCTTGGCCGAGGTGGTGCCCTGGCCGAAGAAGCGGCCAAGGTGGCCGGCCATGGCTTCGTTGAAGTAAGGGCGGAAGGCGAAGTTTCGGCCGACGAA > NC_002947/319061‑319354 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |