New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 327958	64 (1.000)	4 (0.070)	4/242	NT	6.1%	coding (1292/1368 nt)	PP_0270	sensor histidine kinase
	?	NC_002947	= 327985	63 (1.030)					coding (1265/1368 nt)	PP_0270	sensor histidine kinase

AAGACTGTTACCTGATTGCGAATTCCCTGGCCTGCGCAGTCCTATGGTGTGGGGCTGCTCCCACAGAAGATCGCGTTAGCCAGGCAGCAGTATGCTGACCCGCAATCCACCGCTCTCACGGTTCGACAATATCAGCTCACCCCCATGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/327807‑327958 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggGGCTGAGCATTGCCCAGCGGATCGCCGCCAGCCATGGGGGTGAGCTGATATTGTCGAACCGTGAGAGCGGTGGATTGCGGGTCAGCATACTGCTGCCTGGCTAACGCGATCTTCTGTGGGAGCAGCCCCACACCATAGGACTGCG  <  NC_002947/327985‑327841                                                                                                                                                                                                                                                                                                           AAGACTGTTACCTGATTGCGAATTCCCTGGCCTGCGCAGTCCTATGGTGTGGGGCTGCTCCCACAGAAGATCGCGTTAGCCAGGCAGCAGTATGCTGACCCGCAATCCACCGCTCTCACGGTTCGACAATATCAGCTCACCCCCATGGC                                                                                                                                                      <  6:120178/149‑1                            TGGCCTGCGCAGTCCTATGGTGTGGGGCTGCTCCCACAGAAGATCGCGTTAGCCAGGCAGCAGTATGCTGACCCGCAATCCACCGCTCTCACGGTTCGACAATATCAGCTCACCCCCATGGCTGGGGCTGAGCATTGCCCAGCGGATCG                                                                                                                           >  5:248742/1‑149                                      AGTCCTATGGTGTGGGGCTGCTCCCACAGAAGATCGCGTTAGCCAGGCAGCAGTATGCTGACCCGCAATCCACCGCTCTCACGGTTCGACAATATCAGCTCACCCCCATGGCTGGGGCTGAGCATTGCCCAGCGGATCGCCGCCAGCCA                                                                                                                 <  6:248742/149‑1                                                                                CCAGGCAGCAGTATGCTGACCCGCAATCCACCGCTCTCACGGTTCGACAATATCAGCTCACCCCCATGGCTGGGGCTGAGCATTGCCCAGCGGATCGCCGCCAGCCATGG                                                                                                              >  3:67218/1‑110                                                                                CCAGGCAGCAGTATGCTGACCCGCAATCCACCGCTCTCACGGTTCGACAATATCAGCTCACCCCCATGGCTGGGGCTGAGCATTGCCCAGCGGATCGCCGCCAGCCATGG                                                                                                              <  4:67218/110‑1                                                                                                                                                   GGCTGGGGCTGAGCATTGCCCAGCGGATCGCCGCCAGCCATGGGGGTGAGCTGATATTGTCGAACCGTGAGAGCGGTGGATTGCGGGTCAGCATACTGCTGCCTGGCTAACGCGATCTTCTGTGGGAGCAGCCCCACACCATAGGACT     <  4:343779/148‑1                                                                                                                                                     CTGGGGCTGAGCATTGCCCAGCGGATCGCCGCCAGCCATGGGGGTGAGCTGATATTGTCGAACCGTGAGAGCGGTGGATTGCGGGTCAGCATACTGCTGCCTGGCTAACGCGATCTTCTGTGGGAGCAGCCCCACACCATAGGACTGCG  <  2:170904/149‑1                                                                                                                                                     CTGGGGCTGAGCATTGCCCAGCGGATCGCCGCCAGCCATGGGGGTGAGCTGATATTGTCGAACCGTGAGAGCGGTGGATTGCGGGTCAGAATACTGCTGCCTGGCTAACGCGATCTTCTGTGGGAGCAGCCCCACACCATAGGACTGCG  >  6:182449/1‑149                                                                                                                                                                                                                                                                                                           AAGACTGTTACCTGATTGCGAATTCCCTGGCCTGCGCAGTCCTATGGTGTGGGGCTGCTCCCACAGAAGATCGCGTTAGCCAGGCAGCAGTATGCTGACCCGCAATCCACCGCTCTCACGGTTCGACAATATCAGCTCACCCCCATGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/327807‑327958 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggGGCTGAGCATTGCCCAGCGGATCGCCGCCAGCCATGGGGGTGAGCTGATATTGTCGAACCGTGAGAGCGGTGGATTGCGGGTCAGCATACTGCTGCCTGGCTAACGCGATCTTCTGTGGGAGCAGCCCCACACCATAGGACTGCG  <  NC_002947/327985‑327841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.