| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1540365 = | 53 (0.830) | 4 (0.060) | 4/246 | NT | 6.9% | coding (205/2031 nt) | PP_1350 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 1540406 = | 56 (0.900) | coding (164/2031 nt) | PP_1350 | two‑component system sensor histidine kinase/response regulator | |||||
GGCCCTGCTGGTATTGCTGGTGACCATCTTGCTGATGGCCAACCTCACCTTCATCAGCGCCGCCTACTGGATCACCCAGGAAAGCATGGCGCCCCAGGCCATGCAGACCATCGGCCGGCTGGTGGCCAATCCTCAGCTTGCAGCCCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1540516‑1540365‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgATGGTCTGCATGGCCTGGGGCGCCATGCTTTCCTGGGTGATCCAGTAGGCGGCGCTGATGAAGGTGAGGTTGGCC > NC_002947/1540406‑1540480 GGCCCTGCTGGTATTGCTGGTGACCATCTTGCTGATGGCCAACCTCACCTTCATCAGCGCCGCCTACTGGATCACCCAGGAAAGCATGGCGCCCCAGGCCATGCAGACCATCGGCCGGCTGGTGGCCAATCCTCAGCTTGCAGCCCGCG < 6:15260/149‑1 CCCTGCTGGTATTGCTGGTGACCATCTTGCTGATGGCCAACCTCACCTTCATCAGCGCCGCCTACTGGATCACCCAGGAAAGCATGGCGCCCCAGGCCATGCAGACCATCGGCCGGCTGGTGGCCAATCCTCAGCTTGCAGCCCGCGCC > 4:247865/1‑149 GGTATTGCTGGTGACCATCTTGCTGATGGCCAACCTCACCTTCATCAGCGCCGCCTACCGGATCACCCAGGAAAGCATGGCGCCCCAGGCCATGCAGACCATCGGCCGGCTGGTGGCCAATCCTCAGCTTGCAGCCCGCGCCG < 5:381493/143‑1 GGTATTGCTGGTGACCATCTTGCTGATGGCCAACCTCACCTTCATCAGCGCCGCCTACCGGATCACCCAGGAAAGCATGGCGCCCCAGGCCATGCAGACCATCGGCCGGCTGGTGGCCAATCCTCAGCTTGCAGCCCGCGCCG > 6:381493/1‑143 CCATCGACCGGCTGGTGGCCAATCCTCAGCTTGCAGCCCGCGCCGATGGTCTGCATGGCCTGGGGCGCCATGCTTTCCTGGGTGATCCAGTAGGCGGCGC > 5:374384/1‑100 CCATCGACCGGCTGGTGGCCAATCCTCAGCTTGCAGCCCGCGCCGATGGTCTGCATGGCCTGGGGCGCCATGCTTTCCTGGGTGATCCAGTAGGCGGCGC < 6:374384/100‑1 CATCGGCCGGCTGGTGGCCAATCCTCAGCTTGCAGCCCGCGCCGATGGTCTGCATGGCCTGGGGCGCCATGCTTTCCTGGGTGATCCAGTAGGCGGCGCTGATGAAGGTGAG > 3:323443/1‑112 CATCGGCCGGCTGGTGGCCAATCCTCAGCTTGCAGCCCGCGCCGATGGTCTGCATGGCCTGGGGCGCCATGCTTTCCTGGGTGATCCAGTAGGCGGCGCTGATGAAGGTGAG < 4:323443/112‑1 CGATGGTCTGCATGGCCTGGGGCGCCATGCTTTCCTGGGTGATCCAGTAGGCGGCGCTGATGAAGGTGAGGTTGGCC < 5:407083/77‑1 CGATGGTCTGCATGGCCTGGGGCGCCATGCTTTCCTGGGTGATCCAGTAGGCGGCGCTGATGAAGGTGAGGTTGGCC > 6:407083/1‑77 GGCCCTGCTGGTATTGCTGGTGACCATCTTGCTGATGGCCAACCTCACCTTCATCAGCGCCGCCTACTGGATCACCCAGGAAAGCATGGCGCCCCAGGCCATGCAGACCATCGGCCGGCTGGTGGCCAATCCTCAGCTTGCAGCCCGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1540516‑1540365‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgATGGTCTGCATGGCCTGGGGCGCCATGCTTTCCTGGGTGATCCAGTAGGCGGCGCTGATGAAGGTGAGGTTGGCC > NC_002947/1540406‑1540480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |