New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2057800 =	41 (0.640)	4 (0.080)	3/206	NT	14.5%	intergenic (+16/+112)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	2057888 =	14 (0.270)					intergenic (+104/+24)	PP_1832/PP_1833	oxidase/hypothetical protein

GCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2057969‑2057800 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCA  >  NC_002947/2057888‑2058035                                                                                                                                                                                                                                                                                                                                GCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGT                                                                                                                                                                            <  7:359444/148‑1  CCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAG                                                                                                                                                                          <  1:142929/149‑1  CCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTA                                                                                                                                                                           <  1:44553/148‑1        ATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGG                                                                                                                                                                    <  6:305230/149‑1        ATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGG                                                                                                                                                                    >  6:420023/1‑149        ATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGG                                                                                                                                                                    <  2:331383/149‑1             GATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGGGCCGCCCGTAGGCCTGGCGCAGGCAATGTAGGAGCGGGTTCA                                                                                                                                                               >  2:222812/1‑149                     AGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTCCGCCCGACGGTGGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAA                                                                                                                                                       <  1:222812/149‑1                        GCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGC                                                                                                                                                                      <  1:215702/131‑1                        GCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGC                                                                                                                                                                      >  2:215702/1‑131                                                      GCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCG                                                                                                                                                                     >  2:404219/1‑102                                                      GCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCG                                                                                                                                                                     <  1:404219/102‑1                                                                                                CCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATC                                                                                >  6:315711/1‑145                                                                                                   GCTCCTACGCCCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGCGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGA                                                                         >  5:305696/1‑149                                                                                                   GCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGA                                                                            >  2:267472/1‑146                                                                                                   GCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGA                                                                            <  1:267472/146‑1                                                                                                                                                      GGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATC                       <  3:264918/148‑1                                                                                                                                                          CGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCA                  <  8:72463/149‑1                                                                                                                                                                 ACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAG            <  3:217435/148‑1                                                                                                                                                                  ccaGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTACGTCGGCAAGTCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCT          <  4:363134/146‑1                                                                                                                                                                   CCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTG         >  3:42423/1‑149                                                                                                                                                                   CCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTG                                                           <  5:52812/99‑1                                                                                                                                                                   CCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTG                                                           >  6:52812/1‑99                                                                                                                                                                         AGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGC                                                <  4:370114/104‑1                                                                                                                                                                         AGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGC                                                >  3:370114/1‑104                                                                                                                                                                          GAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCA  <  8:359444/149‑1                                                                                                                                                                                                                                                                                                                                GCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2057969‑2057800 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCA  >  NC_002947/2057888‑2058035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.