| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2057800 = | 41 (0.640) | 4 (0.080) | 3/206 | NT | 14.5% | intergenic (+16/+112) | PP_1832/PP_1833 | oxidase/hypothetical protein |
| ? | NC_002947 | 2057888 = | 14 (0.270) | intergenic (+104/+24) | PP_1832/PP_1833 | oxidase/hypothetical protein | |||||
GCGGCGCTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCT > NC_002947/2057652‑2057943 | tgccgaacagctgtcctgggcgatcagtgccatccgtcgtgacctggccgaagaggccagtgaattgccggtcatctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactggcctc < 8:359444‑M1/1‑1 (MQ=255) cagctgtcctgggcgatcagtgccatccgtcgtgacctggccgaagaggccagtgaattgccggtcatctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactggcctCTTCGCgg > 3:42423‑M1/142‑149 (MQ=255) agctgtcctgggcgatcagtgccatccgtcgtgacctggccgaagaggccagtgaattgccggtcatctcgatgctgcagagccagcagcggtttgacttgccgacgtaccgctgaggggtgtattgcctgaactggcctcttcgctgg < 4:363134‑M1/9‑4 (MQ=255) ggTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCgg < 8:230295/147‑1 (MQ=255) ggTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑Gt < 2:130678/149‑1 (MQ=255) ctgtcctgggcgatcagtgccatccgtcgtgacctggccgaagaggccagtgaattgccggtcatctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactggcctCTTCGCGG‑Gt < 3:217435‑M1/10‑1 (MQ=255) ttGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTg > 3:351570/1‑148 (MQ=255) aGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGGAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAAc < 1:349713/148‑1 (MQ=255) tgggcgatcagtgccatccgtcgtgacctggccgaagaggccagtgaattgccggtcatctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactggcctCTTCGCGG‑GTGAACCCg < 8:72463‑M1/17‑1 (MQ=255) gatcagtgccatccgtcgtgacctggccgaagaggccagtgaattgccggtcatctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactggcctCTTCGCGG‑GTGAACCCGCTcc < 3:264918‑M1/21‑1 (MQ=255) aTACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTa > 6:351699/1‑148 (MQ=255) cacCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTAcga < 4:351570/148‑3 (MQ=255) cacCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACAtt < 1:322168/149‑1 (MQ=255) acCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACAtt > 7:100114/1‑148 (MQ=255) cGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGAc < 3:181486/149‑1 (MQ=255) cTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGAt > 4:147504/1‑149 (MQ=255) tGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGcgcgccg > 2:302076/1‑146 (MQ=255) gccgaagaggccagtgaattgccggtcatctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactggcctct < 4:370114‑M1/2‑1 (MQ=255) gccgaagaggccagtgaattgccggtcatctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactggcctct > 3:370114‑M1/103‑104 (MQ=255) cgcTTGTATTGCATCGATGAGGGCATGCATGCGCGGTTTACGGGCGATTTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGCGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAg < 1:74314/148‑1 (MQ=255) cTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAATCCGCTCCTACATTGACTGCGCGATGCCTAAGggcg > 7:11075/1‑149 (MQ=255) tGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCaa < 5:28182/149‑1 (MQ=255) tGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCaa > 2:15072/1‑149 (MQ=255) cagtgaattgccggtcatctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactggcctCTTCGCgg < 5:52812‑M1/8‑1 (MQ=255) cagtgaattgccggtcatctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactggcctCTTCGCgg > 6:52812‑M1/92‑99 (MQ=255) cAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCaa < 2:329831/146‑1 (MQ=255) cAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCaa > 1:329831/1‑146 (MQ=255) aGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAAACCGCTCCTACATTTACTGCGCGATGCCTAAGGGCGGCGCAACCgt > 3:408586/1‑149 (MQ=255) cGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAAc < 1:398252/102‑1 (MQ=255) cGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAAc > 2:398252/1‑102 (MQ=255) gCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTTGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCgtcggtc < 2:46272/149‑1 (MQ=255) gCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCt > 5:71848/1‑107 (MQ=255) gCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCt < 6:71848/107‑1 (MQ=255) aGGGCATGCAGGCGCGGTGTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGt < 8:356910/149‑1 (MQ=255) ggCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAg < 1:15072/149‑1 (MQ=255) ggCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAg < 5:351699/149‑1 (MQ=255) ggCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCGCCAAACTTGACTGGGCGCTGCGGAAGGGCCGCGCCACCggcggtgctag > 4:335336/1‑144 (MQ=255) tcatctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactggccgCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGGCGTAG‑GAGc > 5:305696‑M1/78‑149 (MQ=255) gCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGt < 4:174056/142‑1 (MQ=255) gCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGt > 3:174056/1‑142 (MQ=255) cAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGAt < 1:203469/113‑1 (MQ=255) tctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactggcctCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGc < 1:267472‑M1/72‑1 (MQ=255) tctcgatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactggcctCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGc > 2:267472‑M1/75‑146 (MQ=255) aGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCggg < 3:147504/149‑1 (MQ=255) gcgGTTTACGGTCGATGTGACTGCGCGGTCATTTATTGGTATCGACGAGCTGTAATCGCTTTGGCGGCCGCTTCGCGG‑GTGAACCCGCTCCTAGATTGAGTTCGCGATGCCTAAGGGCGGCGCAACGGTCGGTAGTAG‑GAGCGTGTTc < 4:408586/148‑1 (MQ=255) gatgctgcagagccagcagcggtttgccttgccgacctaccgctgaggggtgtattgcctgaactggcctCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCggg > 6:315711‑M1/71‑145 (MQ=255) cGGGCGATGTGACTGCGCGGGCATTTCTGGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGaa < 7:157222/149‑1 (MQ=255) tgtgACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCa < 8:100114/149‑1 (MQ=255) cgGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GGGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCaa < 1:254376/149‑1 (MQ=255) tCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAATCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGt < 8:11075/149‑1 (MQ=255) cgacgaGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGt < 7:48539/104‑1 (MQ=255) cgacgaGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGt > 8:48539/1‑104 (MQ=255) cATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGTCAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTc < 1:112032/138‑1 (MQ=255) cATTGCCGGCCGCTTCGCGG‑GTGAACCCCCACCAACATTTACAGCGCGAATCCGAAGGGCGGCGCAACCCTCGGTGGTAG‑GAGCCGGGTAAACCGCGAAGAGGCCAGTTAAGGCAATAAACCCCACACCCGTAGGtg > 2:112032/1‑136 (MQ=255) aTTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGtt < 3:217278/88‑1 (MQ=255) ggccgCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCgctgct > 5:420023/1‑149 (MQ=255) | GCGGCGCTGGGTTGAGTTGGGTGATACACCGTTTTGCCTGGCGTTGCGCTTGTATGGCAGCGAGCAGGGCATGCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGG‑GTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCT > NC_002947/2057652‑2057943 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |