New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2057800 =	41 (0.640)	4 (0.080)	3/206	NT	14.5%	intergenic (+16/+112)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	2057888 =	14 (0.270)					intergenic (+104/+24)	PP_1832/PP_1833	oxidase/hypothetical protein

TGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCA  >  NC_002947/2057745‑2058035                                                                                                                                                 |                                                                                                                                                    tgtgACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCa                                                                                                                                                <  8:100114/149‑1 (MQ=255)           cgGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGGGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCaa                                                                                                                                      <  1:254376/149‑1 (MQ=255)                           tCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAATCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGt                                                                                                                      <  8:11075/149‑1 (MQ=255)                                            cATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGTCAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTc                                                                                                                 <  1:112032/138‑1 (MQ=255)                                            cATTGCCGGCCGCTTCGCGGGTGAACCCCCACCAACATTTACAGCGCGAATCCGAAGGGCGGCGCAACCCTCGGTGGTAG‑GAGCCGGGTAAACCGCGAAGAGGCCAGTTAAGGCAATAAACCCCACACCCGTAGGtg                                                                                                                 >  2:112032/1‑136 (MQ=255)                                                   ggccgCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCgctgct                                                                                              >  5:420023/1‑149 (MQ=255)                                                         TTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCCACCGTCGGGCGGAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGctct                                                                                        <  1:222812‑M1/149‑1 (MQ=255)                                                                 TGAACCCGCTCCTACATTGCCTGCGCCAGGCCTACGGGCGGCCCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATc                                                                                >  2:222812‑M1/1‑149 (MQ=255)                                                                      cccgctcctacgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATc                                                                                >  6:315711‑M2/76‑145 (MQ=255)                                                                      CCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGAt                                                                           >  6:420023‑M1/1‑149 (MQ=255)                                                                      CCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGAt                                                                           <  2:331383‑M1/149‑1 (MQ=255)                                                                      CCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGAt                                                                           <  6:305230‑M1/149‑1 (MQ=255)                                                                       CGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGc                                                                                                                         <  1:404219‑M1/102‑1 (MQ=255)                                                                       CGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGc                                                                                                                         >  2:404219‑M1/1‑102 (MQ=255)                                                                        GCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGc                                                                                           >  2:215702‑M1/1‑131 (MQ=255)                                                                        GCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGc                                                                                           <  1:215702‑M1/131‑1 (MQ=255)                                                                         gctcctacgcccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagCGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGa                                                                         >  5:305696‑M2/73‑149 (MQ=255)                                                                         gctcctacgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCgaga                                                                            <  1:267472‑M2/74‑1 (MQ=255)                                                                         gctcctacgaccgacggttgcgccgcccttaggcatcgcgcagtcaatgtaggagcgggttcacccgcgaagAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCgaga                                                                            >  2:267472‑M2/73‑146 (MQ=255)                                                                            CTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCgg                                                                     <  1:142929‑M1/149‑1 (MQ=255)                                                                             TACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCgg                                                                     <  1:44553‑M1/148‑1 (MQ=255)                                                                              ACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGc                                                                    <  7:359444‑M1/148‑1 (MQ=255)                                                                                       gcgcGATGCCTAAGGGCGGCGCAACCGTCGGGCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTgg                                                          <  1:164968/149‑1 (MQ=255)                                                                                        cgcgATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTgg                                                          <  1:331383/148‑1 (MQ=255)                                                                                        cgcgATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTg                                                           <  5:305230/147‑1 (MQ=255)                                                                                             tGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCtt                                                    <  3:335336/149‑1 (MQ=255)                                                                                                cTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAagag                                                                                                                                                    >  8:338466/1‑50 (MQ=255)                                                                                                cTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAagag                                                                                                                                                    <  7:338466/50‑1 (MQ=255)                                                                                                cTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCgg                                                 >  1:352678/1‑149 (MQ=255)                                                                                                 tAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGc                                                >  7:72463/1‑149 (MQ=255)                                                                                                    gggCGGGGAAACCGTCGGGGGTAG‑GGGGGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAg                                             <  1:188170/149‑1 (MQ=255)                                                                                                               ccGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGATATGACCGTCAATTCACTGGCCTATTCGGCCAGGTAACGACGGa                                  >  4:264918/1‑149 (MQ=255)                                                                                                                            ggagcgggttcacccgcgaagAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATc                       <  3:264918‑M2/127‑1 (MQ=255)                                                                                                                                cgggttcacccgcgaagAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCa                  <  8:72463‑M2/132‑1 (MQ=255)                                                                                                                                       acccgcgaagAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAg            <  3:217435‑M2/138‑1 (MQ=255)                                                                                                                                        ccagcgaagAGGCCAGTTCAGGCAATACACCCCTCAGCGGTACGTCGGCAAGTCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCt          <  4:363134‑M2/140‑1 (MQ=255)                                                                                                                                         ccgcgaagAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTg                                                           >  6:52812‑M2/9‑99 (MQ=255)                                                                                                                                         ccgcgaagAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTg                                                           <  5:52812‑M2/91‑1 (MQ=255)                                                                                                                                         ccgcgaagAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTg         >  3:42423‑M2/9‑149 (MQ=255)                                                                                                                                               agAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGc                                                <  4:370114‑M2/102‑1 (MQ=255)                                                                                                                                               agAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGc                                                >  3:370114‑M2/3‑104 (MQ=255)                                                                                                                                                gAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCa  <  8:359444‑M2/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    TGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAG‑GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCA  >  NC_002947/2057745‑2058035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.