| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2273507 = | 55 (0.860) | 3 (0.050) | 3/244 | NT | 5.7% | coding (860/1041 nt) | PP_2004 | AraC family transcriptional regulator |
| ? | NC_002947 | 2273535 = | 47 (0.760) | coding (832/1041 nt) | PP_2004 | AraC family transcriptional regulator | |||||
GGTGCGCAGTCTGGGTGAGCGCATCACCCACCTGCTGGGCCCGCTGCTCAATGGCGGCCGTGAACCGGACCTGGAAGAAGTGGCGCTGCACTTGCAGCTACCAAGCTGGACCTTGCGCCGCAAGCTCGCGGAGGAAGGCACGCGCTTTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2273659‑2273507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgaGCTTGCGGCGCAAGGTCCAGCTTGGTAGCTGCAAGTGCAGCGCCACTTCTTCCAGGTCCGGTTCACGGCCGCCATTGAGCAGCGGGCCCAGCAGGTGGGTGATGCGCTCACCCAGACTGCGCACCCGCGTGCGCTGCAGCAGCTC > NC_002947/2273535‑2273679 GGTGCGCAGGCTGGTGGAGCGCATCACCCACCTGCTGGGCCCGCTGCTCAATGGCGGCCGTGAACCGGACCTGGCAGAAGTGGCGCTGCACTTGCAGCTACCAAGCTGGACCTTGCGCCGCAAGCTCGCGGAGGAAGGCACGCGCTTTC < 8:299255/149‑1 GCGCAGTCTGGGTGAGCGCATCACCCACCTGCTGGGCCCGCTGCTCAATGGCGGCCGTGAACCGGACCTGGAAGAAGTGGCGCTGCACTTGCAGCTACCAAGCTGGACCTTGCGCCGCAAGCTCGCGGAGGAAGGCACGCGCTTTCGC > 6:71543/1‑148 CGCAGTCTGGGTGAGCGCATCACCCACCTGCTGGGCCCGCTGCTCAATGGCGGCCGTGAACCGGACCTGGAAGAAGTGGCGCTGCACTTGCAGCTACCAAGCTGGACCTTGCGCCGCAAGCTCGCGGAGGAAGGCACGCGCTTTCGCGA > 1:411174/1‑149 CCCACCTGCTGGGCCCGCTGCTCAATGGCGGCCGTGAACCGGACCTGGAAGAAGTGGCGCTGCACTTGCAGCTACCAAGCTGGACCTTGCGCCGCAAGCTCGCGGAGGAAGGCACGCGCTTTC > 1:194908/1‑123 CCCACCTGCTGGGCCCGCTGCTCAATGGCGGCCGTGAACCGGACCTGGAAGAAGTGGCGCTGCACTTGCAGCTACCAAGCTGGACCTTGCGCCGCAAGCTCGCGGAGGAAGGCACGCGCTTTC < 2:194908/123‑1 CGCAAGCTCGCGGAGGAAGGCACGCGCTTTCGCGAGCTTGCGGCGCAAGGTCCAGCTTGGTAGCTGCAAGTGCAGCGCCACTTCTTCCAGGTCCGGTTCACGGCCGCCATTGAGCAGCGGGCCCAGCAGGTGGGTGATGCGCTCACCCA > 3:42997/1‑149 GCTCGCGGAGGAAGGCACGCGCTTTCGCGAGCTTGCGGCGCAAGGTCCAGCTTGGTAGCTGCAA > 7:326794/1‑64 GCTCGCGGAGGAAGGCACGCGCTTTCGCGAGCTTGCGGCGCAAGGTCCAGCTTGGTAGCTGCAA < 8:326794/64‑1 GCGAGCTTGCGGCGCAAGGTCCAGCTTGGTAGCTGCAAGTGCAGCGCCACTTCTTCCAGGTCCGGTTCACGGCCGCCATTGAGCAGCGGGCCCAGCAGGTGGGTGATGCGCTCACCCAGACTGCGCACCCGCGTGCGCTGCAGCAGCTC > 7:64642/1‑149 GGTGCGCAGTCTGGGTGAGCGCATCACCCACCTGCTGGGCCCGCTGCTCAATGGCGGCCGTGAACCGGACCTGGAAGAAGTGGCGCTGCACTTGCAGCTACCAAGCTGGACCTTGCGCCGCAAGCTCGCGGAGGAAGGCACGCGCTTTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2273659‑2273507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgaGCTTGCGGCGCAAGGTCCAGCTTGGTAGCTGCAAGTGCAGCGCCACTTCTTCCAGGTCCGGTTCACGGCCGCCATTGAGCAGCGGGCCCAGCAGGTGGGTGATGCGCTCACCCAGACTGCGCACCCGCGTGCGCTGCAGCAGCTC > NC_002947/2273535‑2273679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |